Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CENPCP1-201ENST00000533085 2578 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
COL6A5A8TX70 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-1320P-201ENST00000390838 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-1269P-201ENST00000391139 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 AL357078.2-201ENST00000416486 427 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 AC244035.1-201ENST00000430042 390 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 AL161651.1-201ENST00000440882 223 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-599P-201ENST00000459383 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-1193P-201ENST00000459461 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 AC008427.1-201ENST00000503102 655 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 AC024619.4-201ENST00000580924 316 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-368P-201ENST00000620928 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 RNU6-538P-201ENST00000622329 107 ntBASIC0.95□□□□□ -2.26
COL6A5A8TX70 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC0.95□□□□□ -2.26
COL6A5A8TX70 Y_RNA.35-201ENST00000362601 101 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 RNU2-25P-201ENST00000411041 191 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 MTND1P23-201ENST00000416931 372 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC004941.2-201ENST00000427009 228 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC092902.1-201ENST00000486999 259 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 Y_RNA.654-201ENST00000497848 106 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 MIR3973-201ENST00000579824 107 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC018754.1-201ENST00000607486 925 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC108706.1-201ENST00000611053 297 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 U4.2-201ENST00000618561 85 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC103710.2-202ENST00000641454 2853 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 Y_RNA.18-201ENST00000362461 102 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 SNORD114-15-201ENST00000364687 72 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 RNU2-40P-201ENST00000410833 196 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 Z85995.1-201ENST00000415547 335 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 PGBD4P3-201ENST00000440731 581 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AL121871.1-201ENST00000443413 436 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 NAA50-206ENST00000493454 964 ntTSL 2 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC093801.2-201ENST00000503966 1050 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC125611.2-201ENST00000551907 647 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AC123912.5-201ENST00000605470 343 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 AL590099.1-201ENST00000615276 138 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
COL6A5A8TX70 MTND4P34-201ENST00000572715 1371 ntBASIC0.94□□□□□ -2.26
COL6A5A8TX70 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 SNX3P1X-201ENST00000414887 175 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 AK3P2-201ENST00000507976 429 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 RNA5SP67-201ENST00000516422 131 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 RNA5SP364-201ENST00000516938 78 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 VN1R107P-201ENST00000601784 209 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 RLIMP2-201ENST00000427891 1563 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL136520.1-201ENST00000600311 1322 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 MIR514B-201ENST00000516774 80 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL163153.1-201ENST00000554223 283 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL391261.3-201ENST00000557194 520 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AC112503.2-201ENST00000609005 552 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL445493.3-201ENST00000619568 477 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 AL354685.2-201ENST00000448218 1447 ntBASIC0.93□□□□□ -2.26
COL6A5A8TX70 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC0.93□□□□□ -2.26
COL6A5A8TX70 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL6A5A8TX70 RNU6-997P-201ENST00000384725 107 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A5A8TX70 CLIC4P1-201ENST00000453177 535 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 AC023790.1-201ENST00000482174 347 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 AC009901.1-201ENST00000506703 541 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
COL6A5A8TX70 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
COL6A5A8TX70 AC087808.1-201ENST00000520501 361 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.92□□□□□ -2.26
COL6A5A8TX70 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.92□□□□□ -2.26
COL6A5A8TX70 AL049838.1-201ENST00000563647 981 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 MIR4458-201ENST00000578872 75 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 MIR6840-201ENST00000611937 71 ntBASIC0.92□□□□□ -2.26
COL6A5A8TX70 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms