Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC087752.4-201ENST00000605911 462 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC068831.7-201ENST00000616954 363 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 TEX21P-201ENST00000447107 1476 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 MTND5P27-201ENST00000428871 1720 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 RNU4-1-201ENST00000363925 141 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 RPS4XP3-201ENST00000398541 413 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AL356967.1-201ENST00000406305 431 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC245054.2-201ENST00000415639 319 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC119618.1-201ENST00000434191 222 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC092573.2-201ENST00000434546 243 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 SNRPEP4-201ENST00000435815 279 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 SETP5-201ENST00000437270 562 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC093156.1-201ENST00000440382 670 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC020550.1-201ENST00000447385 163 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 TPTE2P5-203ENST00000458118 728 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 LARP1BP2-201ENST00000486594 519 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC010587.1-201ENST00000505809 469 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 CASP1P1-201ENST00000526345 212 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC119751.7-201ENST00000600494 245 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC091304.9-201ENST00000612091 226 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AP001506.1-201ENST00000615444 211 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 PLCE1P1-201ENST00000622094 305 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 CR392039.5-201ENST00000623201 510 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC090582.1-201ENST00000636321 199 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 AC007256.1-201ENST00000392253 2765 ntBASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.47□□□□□ -1.85
LIMA1Q9UHB6 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC021755.1-201ENST00000559747 1447 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RNU5E-1-201ENST00000362477 120 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AL513331.1-201ENST00000411908 397 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC063979.1-201ENST00000415539 377 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC091390.3-201ENST00000426478 338 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 MTCO1P19-201ENST00000443487 500 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 MTATP6P30-201ENST00000443540 664 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC012181.1-201ENST00000479895 423 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RNA5SP337-201ENST00000517007 109 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RNU2-46P-201ENST00000517038 113 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC023632.4-201ENST00000517783 191 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RPL12P22-201ENST00000519073 490 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 MIR3682-201ENST00000581338 84 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 RN7SKP299-201ENST00000606679 301 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AL451064.1-201ENST00000607718 471 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC103710.2-201ENST00000609912 942 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AC100793.4-201ENST00000613683 429 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 AL355365.1-201ENST00000616480 294 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMA1Q9UHB6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 Y_RNA.51-201ENST00000362725 102 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 U8.3-201ENST00000363321 132 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RNU6-511P-201ENST00000363496 107 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RNY4P34-201ENST00000364779 95 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 MIR490-201ENST00000384865 128 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RPL23AP32-201ENST00000395315 459 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RNU6-248P-201ENST00000410720 107 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RNU2-8P-201ENST00000410727 190 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 RPS29P4-201ENST00000414733 161 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 MTCO2P34-201ENST00000421994 607 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 AC092017.2-201ENST00000427600 362 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 AC091286.1-201ENST00000431233 461 ntBASIC3.45□□□□□ -1.86
LIMA1Q9UHB6 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms