Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORA17.1-201ENST00000362945 126 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 RNU6-774P-201ENST00000363238 107 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 PCNPP3-201ENST00000393579 471 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC007560.1-201ENST00000426912 237 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AL590383.1-201ENST00000428602 75 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC007389.2-201ENST00000434630 306 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AL078601.1-201ENST00000444542 271 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 SEPT14P8-201ENST00000508026 178 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC004980.4-201ENST00000513375 203 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 RNU6-1256P-201ENST00000516539 103 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 SCARNA24.2-201ENST00000516968 130 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC027369.5-201ENST00000533838 755 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 CBX3P4-201ENST00000538909 354 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 MIR4697-201ENST00000582977 78 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AC073657.2-201ENST00000605661 303 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 U4.7-201ENST00000638126 106 ntBASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIMD1Q9UGP4 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AC025031.4-201ENST00000621248 3271 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AL034549.2-201ENST00000618285 3373 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 RN7SKP104-201ENST00000362605 328 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 RNU4-90P-201ENST00000362773 141 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 SNORD113-8-201ENST00000363497 74 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 RNU6-741P-201ENST00000383889 107 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AL079342.1-201ENST00000401460 267 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 CYP4F29P-201ENST00000420685 446 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AC009127.1-201ENST00000467090 155 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AP006245.1-201ENST00000522549 120 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 BNIP3P1-201ENST00000547295 580 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 HMGB1P14-201ENST00000557424 591 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 AP002826.1-201ENST00000608835 315 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 SCARNA4-202ENST00000625402 129 ntBASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIMD1Q9UGP4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 ANKRD36BP1-201ENST00000358576 1779 ntBASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
LIMD1Q9UGP4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 LINC01109-201ENST00000603837 3081 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC026523.2-201ENST00000625039 7739 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AL138820.1-201ENST00000617901 5305 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 RNA5SP453-201ENST00000362503 119 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 RNU6-290P-201ENST00000365212 101 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 RNU6-166P-201ENST00000384371 107 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 Y_RNA.602-201ENST00000410535 92 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC091390.1-201ENST00000433904 331 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 ANP32BP2-201ENST00000454525 545 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 snoU13.30-201ENST00000458951 104 ntBASIC5.64□□□□□ -1.51
LIMD1Q9UGP4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms