Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MTCO3P1-205ENST00000422088 832 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 PSMA6P3-201ENST00000428242 164 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 RPL7P54-201ENST00000438336 674 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 HMGB1P18-201ENST00000438801 619 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 ARF4P4-201ENST00000439608 520 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC244505.3-201ENST00000454598 187 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 HMGN2P23-201ENST00000456759 269 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC013828.1-201ENST00000481845 158 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 NAMPTP2-201ENST00000505629 1115 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 RNA5SP458-201ENST00000516188 119 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 RNU1-104P-201ENST00000517280 175 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 CASP1P1-201ENST00000526345 212 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 ATP5F1P5-201ENST00000526403 760 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AP003066.2-201ENST00000529375 555 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC008127.2-201ENST00000549925 1075 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 ACTR3BP3-201ENST00000565577 979 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC122134.1-202ENST00000569111 1201 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AP001542.2-201ENST00000593141 364 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC097504.2-201ENST00000608088 454 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC092954.1-201ENST00000609121 445 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC093673.2-201ENST00000609674 331 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC025588.4-201ENST00000615802 908 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC006927.2-201ENST00000639256 389 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 ZNF355P-201ENST00000427301 3216 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 AC093536.2-201ENST00000565257 1406 ntBASIC1.97□□□□□ -2.09
LMX1AQ8TE12 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
LMX1AQ8TE12 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 Z82209.1-201ENST00000422141 2135 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU1-105P-201ENST00000363470 161 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU6-707P-201ENST00000364647 95 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 SET-203ENST00000372688 801 ntTSL 2 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU6-878P-201ENST00000384578 110 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNA5SP354-201ENST00000391247 136 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AL035405.1-201ENST00000400795 710 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 U3.37-201ENST00000408528 213 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU2-28P-201ENST00000410457 189 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU2-15P-201ENST00000410692 191 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RPS7P9-201ENST00000414704 586 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AL445685.2-201ENST00000422551 342 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 MTCO3P30-201ENST00000426425 670 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RPL7L1P10-201ENST00000427790 463 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 FABP5P13-201ENST00000452144 328 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC104164.3-201ENST00000467363 1258 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC117522.2-201ENST00000510049 657 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 RNU6-1261P-201ENST00000517194 104 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC125611.1-201ENST00000549563 229 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 MTND4LP25-201ENST00000570218 163 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 VN1R87P-201ENST00000596706 487 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AC087821.2-201ENST00000637086 450 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 ATM-230ENST00000640388 578 ntTSL 5 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 MTCO1P9-201ENST00000505577 1534 ntBASIC1.96□□□□□ -2.1
LMX1AQ8TE12 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
LMX1AQ8TE12 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
LMX1AQ8TE12 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
LMX1AQ8TE12 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
LMX1AQ8TE12 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 RNU6-1159P-201ENST00000362933 107 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 SNORA40.18-201ENST00000391200 128 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 SNORA26.9-201ENST00000391322 122 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 AL079342.2-201ENST00000403367 482 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 RNU2-72P-201ENST00000411175 163 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 AC019070.1-201ENST00000415008 1024 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 SRIP2-201ENST00000428470 166 ntBASIC1.95□□□□□ -2.1
LMX1AQ8TE12 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.95□□□□□ -2.1
LMX1AQ8TE12 AC090774.1-201ENST00000435925 246 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms