Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 AC108734.3-201ENST00000481241 1165 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 AC114322.1-201ENST00000506771 926 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 IGKV3-31-201ENST00000523109 329 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 SLC2A13P1-201ENST00000531560 322 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 LRRC6P1-201ENST00000532188 885 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC007115.1-201ENST00000546853 234 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA1P55317 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC1.97□□□□□ -2.09
FOXA1P55317 HIGD1AP17-201ENST00000554576 276 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC026464.5-201ENST00000562497 722 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 SNORD53-201ENST00000579969 78 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.97□□□□□ -2.09
FOXA1P55317 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.97□□□□□ -2.09
FOXA1P55317 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 AL606834.3-201ENST00000602615 496 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC013444.2-201ENST00000603317 787 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 SNRPGP19-201ENST00000603826 189 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 DUXAP11-201ENST00000603858 526 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 DUXAP10-204ENST00000612052 616 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AL450472.3-201ENST00000615578 367 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AL158163.2-201ENST00000619110 700 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC104985.3-201ENST00000623479 597 ntBASIC1.97□□□□□ -2.09
FOXA1P55317 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.97□□□□□ -2.09
FOXA1P55317 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
FOXA1P55317 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
FOXA1P55317 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA1P55317 RNU1-73P-201ENST00000383971 164 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 SNORA67.3-201ENST00000384366 140 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 TAS2R15P-201ENST00000390674 928 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 RNU2-43P-201ENST00000410306 190 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 MTATP6P27-201ENST00000416987 621 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA1P55317 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC1.96□□□□□ -2.1
FOXA1P55317 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
FOXA1P55317 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA1P55317 MTCYBP45-201ENST00000435243 565 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 NDUFB4P6-201ENST00000436819 366 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 CBWD4P-201ENST00000445695 655 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AL592447.1-201ENST00000447592 540 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 AC008481.1-201ENST00000463278 396 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC079203.1-201ENST00000487972 404 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC079804.2-201ENST00000490376 200 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
FOXA1P55317 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 HMGB1P28-201ENST00000507778 552 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC113420.1-201ENST00000507903 571 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 SNORA19.3-201ENST00000516165 130 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC022861.1-201ENST00000522981 663 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 HSPA8P13-201ENST00000523715 472 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA1P55317 AP002770.2-201ENST00000543613 532 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.96□□□□□ -2.1
FOXA1P55317 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA1P55317 GLUD1P4-201ENST00000590914 418 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AL022067.1-201ENST00000602426 454 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC004853.1-201ENST00000604902 698 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC069304.2-201ENST00000605154 435 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC080013.4-201ENST00000607624 649 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 TUG1_1.1-201ENST00000610654 145 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC024257.5-201ENST00000612739 531 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC243773.3-201ENST00000613270 256 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 Y_RNA.783-201ENST00000613546 102 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
FOXA1P55317 AC123767.1-202ENST00000620407 817 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC079597.1-201ENST00000624306 508 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 AC064859.1-201ENST00000624741 174 ntBASIC1.96□□□□□ -2.1
FOXA1P55317 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.96□□□□□ -2.1
FOXA1P55317 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
FOXA1P55317 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
FOXA1P55317 RNU4-51P-201ENST00000364206 140 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 SNORA70B-201ENST00000384210 135 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 SNORA64-201ENST00000384674 134 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 SNORA40.2-201ENST00000390847 128 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 RNU6-1000P-201ENST00000391066 106 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AC068533.2-201ENST00000411872 306 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 MTATP6P19-201ENST00000413797 659 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AL592310.1-201ENST00000414330 671 ntBASIC1.95□□□□□ -2.1
FOXA1P55317 AL449283.1-202ENST00000418249 604 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms