Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 U3.39-201ENST00000408569 239 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC078974.1-201ENST00000411597 223 ntBASIC3.75□□□□□ -1.81
CTCFP49711 HMGB3P23-201ENST00000414981 585 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC006989.1-201ENST00000427212 131 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.75□□□□□ -1.81
CTCFP49711 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.75□□□□□ -1.81
CTCFP49711 IFNA11P-201ENST00000446352 526 ntBASIC3.75□□□□□ -1.81
CTCFP49711 RPL31P3-201ENST00000458430 332 ntBASIC3.75□□□□□ -1.81
CTCFP49711 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.75□□□□□ -1.81
CTCFP49711 AF131216.2-201ENST00000512316 564 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC022483.1-201ENST00000514020 567 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC117532.1-201ENST00000514638 323 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.75□□□□□ -1.81
CTCFP49711 MTND4LP18-201ENST00000526864 291 ntBASIC3.75□□□□□ -1.81
CTCFP49711 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CTCFP49711 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.75□□□□□ -1.81
CTCFP49711 SNRPGP16-201ENST00000533275 226 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.75□□□□□ -1.81
CTCFP49711 AC015712.3-201ENST00000559380 164 ntBASIC3.75□□□□□ -1.81
CTCFP49711 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.75□□□□□ -1.81
CTCFP49711 DEFB122-202ENST00000569013 197 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AL358072.1-201ENST00000604156 575 ntBASIC3.75□□□□□ -1.81
CTCFP49711 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.75□□□□□ -1.81
CTCFP49711 AL158063.1-201ENST00000615349 536 ntBASIC3.75□□□□□ -1.81
CTCFP49711 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.75□□□□□ -1.81
CTCFP49711 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.75□□□□□ -1.81
CTCFP49711 AC009812.4-201ENST00000569134 1805 ntBASIC3.74□□□□□ -1.81
CTCFP49711 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CTCFP49711 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CTCFP49711 AL513185.3-201ENST00000433335 1300 ntBASIC3.74□□□□□ -1.81
CTCFP49711 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CTCFP49711 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CTCFP49711 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.74□□□□□ -1.81
CTCFP49711 Y_RNA.77-201ENST00000362962 107 ntBASIC3.74□□□□□ -1.81
CTCFP49711 RNA5SP42-201ENST00000364278 115 ntBASIC3.74□□□□□ -1.81
CTCFP49711 RNU5E-5P-201ENST00000365379 116 ntBASIC3.74□□□□□ -1.81
CTCFP49711 RNU6-533P-201ENST00000384144 107 ntBASIC3.74□□□□□ -1.81
CTCFP49711 SNORA7.4-201ENST00000384249 137 ntBASIC3.74□□□□□ -1.81
CTCFP49711 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CTCFP49711 AL136372.1-201ENST00000403060 228 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AL136116.1-201ENST00000403591 381 ntBASIC3.74□□□□□ -1.81
CTCFP49711 RPL7P25-201ENST00000404151 721 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.74□□□□□ -1.81
CTCFP49711 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.74□□□□□ -1.81
CTCFP49711 AC004866.2-201ENST00000438285 481 ntBASIC3.74□□□□□ -1.81
CTCFP49711 RPS24P13-201ENST00000442520 397 ntBASIC3.74□□□□□ -1.81
CTCFP49711 COX6CP2-201ENST00000444980 225 ntBASIC3.74□□□□□ -1.81
CTCFP49711 TAF9P1-201ENST00000445421 515 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC104058.1-201ENST00000448028 297 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC009961.3-201ENST00000449832 765 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC234775.1-201ENST00000454247 670 ntBASIC3.74□□□□□ -1.81
CTCFP49711 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.74□□□□□ -1.81
CTCFP49711 TAF9P2-201ENST00000454958 515 ntBASIC3.74□□□□□ -1.81
CTCFP49711 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.74□□□□□ -1.81
CTCFP49711 AC133134.1-201ENST00000466800 359 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.74□□□□□ -1.81
CTCFP49711 MLLT10P2-201ENST00000506434 249 ntBASIC3.74□□□□□ -1.81
CTCFP49711 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.74□□□□□ -1.81
CTCFP49711 AP002748.2-201ENST00000528671 348 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.74□□□□□ -1.81
CTCFP49711 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.74□□□□□ -1.81
CTCFP49711 ZNF519P3-201ENST00000557158 1032 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.74□□□□□ -1.81
CTCFP49711 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.74□□□□□ -1.81
CTCFP49711 AC012443.1-201ENST00000605605 231 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC080013.6-201ENST00000606185 215 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AC135507.1-201ENST00000607214 561 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AL355472.4-201ENST00000610233 626 ntBASIC3.74□□□□□ -1.81
CTCFP49711 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.74□□□□□ -1.81
CTCFP49711 AL157817.1-201ENST00000614264 790 ntBASIC3.74□□□□□ -1.81
CTCFP49711 AL512643.1-201ENST00000635735 524 ntBASIC3.74□□□□□ -1.81
CTCFP49711 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CTCFP49711 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.74□□□□□ -1.81
CTCFP49711 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CTCFP49711 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CTCFP49711 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CTCFP49711 RPL7P26-201ENST00000333817 754 ntBASIC3.73□□□□□ -1.81
CTCFP49711 CCNG1P1-201ENST00000406783 885 ntBASIC3.73□□□□□ -1.81
CTCFP49711 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.73□□□□□ -1.81
CTCFP49711 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.73□□□□□ -1.81
CTCFP49711 AC090774.1-201ENST00000435925 246 ntBASIC3.73□□□□□ -1.81
CTCFP49711 MTND4P32-201ENST00000437189 1237 ntBASIC3.73□□□□□ -1.81
CTCFP49711 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 AL049734.2-201ENST00000441066 616 ntBASIC3.73□□□□□ -1.81
CTCFP49711 AL121871.1-201ENST00000443413 436 ntBASIC3.73□□□□□ -1.81
CTCFP49711 TPT1P14-201ENST00000448018 505 ntBASIC3.73□□□□□ -1.81
CTCFP49711 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 SNRPGP9-201ENST00000456025 225 ntBASIC3.73□□□□□ -1.81
CTCFP49711 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CTCFP49711 AC055855.1-201ENST00000489563 579 ntBASIC3.73□□□□□ -1.81
CTCFP49711 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.73□□□□□ -1.81
CTCFP49711 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.73□□□□□ -1.81
CTCFP49711 FABP5P5-201ENST00000515537 406 ntBASIC3.73□□□□□ -1.81
CTCFP49711 RNU6-548P-201ENST00000517083 115 ntBASIC3.73□□□□□ -1.81
CTCFP49711 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.73□□□□□ -1.81
CTCFP49711 AC138761.3-201ENST00000579993 334 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms