Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL359273.1-201ENST00000510918 627 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.34□□□□□ -1.71
CBX4O00257 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.34□□□□□ -1.71
CBX4O00257 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.34□□□□□ -1.71
CBX4O00257 SNORA19.2-201ENST00000516013 114 ntBASIC4.34□□□□□ -1.71
CBX4O00257 RNA5SP73-201ENST00000516744 108 ntBASIC4.34□□□□□ -1.71
CBX4O00257 OR8R1P-201ENST00000543943 764 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.34□□□□□ -1.71
CBX4O00257 MED28P6-201ENST00000558776 231 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC022968.1-201ENST00000567372 442 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.34□□□□□ -1.71
CBX4O00257 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.34□□□□□ -1.71
CBX4O00257 AL161729.3-201ENST00000603533 673 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC022893.3-201ENST00000607665 437 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AP002826.1-201ENST00000608835 315 ntBASIC4.34□□□□□ -1.71
CBX4O00257 U2.17-201ENST00000611454 95 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AL355810.1-201ENST00000614629 552 ntBASIC4.34□□□□□ -1.71
CBX4O00257 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.34□□□□□ -1.71
CBX4O00257 LARP1BP1-201ENST00000506036 1359 ntBASIC4.34□□□□□ -1.71
CBX4O00257 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.34□□□□□ -1.71
CBX4O00257 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
CBX4O00257 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.34□□□□□ -1.72
CBX4O00257 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.34□□□□□ -1.72
CBX4O00257 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CBX4O00257 AC121333.1-201ENST00000567488 2709 ntBASIC4.33□□□□□ -1.72
CBX4O00257 OR4G2P-202ENST00000641004 1759 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 SNORA51.2-201ENST00000364595 132 ntBASIC4.33□□□□□ -1.72
CBX4O00257 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CBX4O00257 RNA5SP171-201ENST00000391071 115 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AL121834.1-202ENST00000404494 277 ntBASIC4.33□□□□□ -1.72
CBX4O00257 MIR1290-201ENST00000408735 78 ntBASIC4.33□□□□□ -1.72
CBX4O00257 RNU6-628P-201ENST00000410675 107 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.33□□□□□ -1.72
CBX4O00257 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 RBMY1KP-201ENST00000423480 476 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.33□□□□□ -1.72
CBX4O00257 PRPS1P1-201ENST00000445305 876 ntBASIC4.33□□□□□ -1.72
CBX4O00257 ABCF2P2-201ENST00000450549 296 ntBASIC4.33□□□□□ -1.72
CBX4O00257 RNU6-189P-201ENST00000516120 101 ntBASIC4.33□□□□□ -1.72
CBX4O00257 RNU6-927P-201ENST00000516199 100 ntBASIC4.33□□□□□ -1.72
CBX4O00257 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 OR11H5P-201ENST00000554039 926 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC4.33□□□□□ -1.72
CBX4O00257 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.33□□□□□ -1.72
CBX4O00257 AC026464.5-201ENST00000562497 722 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC245389.1-201ENST00000605141 529 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AL353621.2-201ENST00000605340 133 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC021646.1-201ENST00000605469 484 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC103710.3-201ENST00000608157 948 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC104237.2-201ENST00000612456 443 ntBASIC4.33□□□□□ -1.72
CBX4O00257 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CBX4O00257 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.33□□□□□ -1.72
CBX4O00257 MIR1302-1-201ENST00000637932 143 ntBASIC4.33□□□□□ -1.72
CBX4O00257 MIR492-201ENST00000638676 116 ntBASIC4.33□□□□□ -1.72
CBX4O00257 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CBX4O00257 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.33□□□□□ -1.72
CBX4O00257 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CBX4O00257 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CBX4O00257 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CBX4O00257 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CBX4O00257 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.32□□□□□ -1.72
CBX4O00257 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CBX4O00257 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CBX4O00257 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CBX4O00257 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CBX4O00257 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CBX4O00257 RNU6-1011P-201ENST00000384668 107 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AL445189.1-201ENST00000405722 338 ntBASIC4.32□□□□□ -1.72
CBX4O00257 HDGFP1-201ENST00000405943 252 ntBASIC4.32□□□□□ -1.72
CBX4O00257 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.32□□□□□ -1.72
CBX4O00257 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.32□□□□□ -1.72
CBX4O00257 RPS12P24-201ENST00000412619 387 ntBASIC4.32□□□□□ -1.72
CBX4O00257 RPL21P66-201ENST00000426566 466 ntBASIC4.32□□□□□ -1.72
CBX4O00257 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.32□□□□□ -1.72
CBX4O00257 AL356867.1-201ENST00000429623 299 ntBASIC4.32□□□□□ -1.72
CBX4O00257 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.32□□□□□ -1.72
CBX4O00257 RPL23AP46-201ENST00000438548 490 ntBASIC4.32□□□□□ -1.72
CBX4O00257 HMGB1P18-201ENST00000438801 619 ntBASIC4.32□□□□□ -1.72
CBX4O00257 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.32□□□□□ -1.72
CBX4O00257 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.32□□□□□ -1.72
CBX4O00257 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.32□□□□□ -1.72
CBX4O00257 RPL5P30-201ENST00000465511 891 ntBASIC4.32□□□□□ -1.72
CBX4O00257 RN7SL542P-201ENST00000467147 294 ntBASIC4.32□□□□□ -1.72
CBX4O00257 S100A11P1-201ENST00000477525 312 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AF213884.1-201ENST00000488102 463 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AP001086.1-201ENST00000494882 321 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AC104164.2-201ENST00000496953 495 ntBASIC4.32□□□□□ -1.72
CBX4O00257 HIGD1AP13-201ENST00000509878 289 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.32□□□□□ -1.72
CBX4O00257 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.32□□□□□ -1.72
CBX4O00257 CBX3P7-201ENST00000532876 502 ntBASIC4.32□□□□□ -1.72
CBX4O00257 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.32□□□□□ -1.72
CBX4O00257 BNIP3P25-201ENST00000596023 559 ntBASIC4.32□□□□□ -1.72
CBX4O00257 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms