Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC114774.1-201ENST00000507410 1770 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 RNA5SP267-201ENST00000364893 126 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 UBA52P6-201ENST00000399822 382 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AL022722.2-201ENST00000402519 180 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 FRG2FP-204ENST00000453982 852 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC087588.1-201ENST00000462203 316 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 RPL23AP75-201ENST00000491601 451 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SKP49-201ENST00000516675 260 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 SNORA70.20-201ENST00000516848 126 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-844P-201ENST00000517175 102 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 IGLV2-28-201ENST00000520681 304 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC084851.1-201ENST00000529105 249 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC126615.2-201ENST00000553003 515 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 SNORD95-201ENST00000579879 68 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AC006254.2-201ENST00000603259 279 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 RMST_6.1-201ENST00000611980 203 ntBASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
PCDHB3Q9Y5E6 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RNU5A-1-201ENST00000362698 116 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-263P-201ENST00000363811 107 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-961P-201ENST00000363893 105 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RNU4-11P-201ENST00000365287 132 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 COX6B1P7-201ENST00000430845 235 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SL189P-201ENST00000468631 289 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC027308.1-201ENST00000517993 110 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 MIR3613-201ENST00000579844 87 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC004825.2-201ENST00000616634 455 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AL691477.1-201ENST00000624398 162 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 Clostridiales-1.2-201ENST00000636724 160 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC009229.4-201ENST00000623854 1947 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 OR13C1P-202ENST00000641378 2919 ntBASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
PCDHB3Q9Y5E6 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 RNA5SP197-201ENST00000363357 119 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 MIR32-201ENST00000384965 70 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 BTF3L4P2-201ENST00000392798 346 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 MIR513C-201ENST00000401352 84 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 CYCSP10-201ENST00000417973 294 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 AC099670.2-201ENST00000435130 321 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 AC096638.1-201ENST00000444678 216 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 SDC4P-201ENST00000453285 601 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SL57P-201ENST00000493687 290 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 ATP5LP3-201ENST00000514223 304 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-377P-201ENST00000515965 102 ntBASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
PCDHB3Q9Y5E6 DEFB131C-201ENST00000528817 165 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms