Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR325-201ENST00000385260 98 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC087499.2-201ENST00000432861 149 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC105272.1-201ENST00000438604 198 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 MTCYBP3-201ENST00000445588 1137 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 SNRPGP6-201ENST00000451124 220 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC010099.1-201ENST00000455434 375 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AP001486.1-201ENST00000463339 476 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 SETP11-201ENST00000473027 690 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 RNU6-1282P-201ENST00000516735 96 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 HPRT1P3-201ENST00000539521 576 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 ISCA1P3-201ENST00000577104 373 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AF038458.1-201ENST00000588406 262 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 TPMTP1-201ENST00000592307 737 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AP000811.1-201ENST00000603803 651 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC018714.1-201ENST00000605028 208 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC107294.3-201ENST00000609211 526 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AL355816.2-201ENST00000610049 647 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC009159.2-201ENST00000617603 606 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC112204.3-201ENST00000623822 332 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AC091965.5-201ENST00000624785 342 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 OR5H6-203ENST00000642105 978 ntBASIC2.83□□□□□ -1.96
LHX3Q9UBR4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
LHX3Q9UBR4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC007785.2-201ENST00000598627 1916 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AP000568.1-201ENST00000282964 442 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 SAR1AP2-201ENST00000392696 594 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 RPL17P50-201ENST00000396131 546 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL109755.1-201ENST00000401791 649 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL512844.2-201ENST00000433990 593 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL008629.1-201ENST00000438615 184 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL513043.1-201ENST00000439124 535 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 CBWD4P-201ENST00000445695 655 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL049873.1-201ENST00000480540 376 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC092185.1-201ENST00000491371 97 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC117522.3-201ENST00000507974 584 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 CDC42P4-201ENST00000510507 563 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 MTATP6P15-201ENST00000527233 835 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 DNAJC8P1-201ENST00000554535 372 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 HMGB1P6-201ENST00000569046 646 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 VN1R90P-201ENST00000595717 726 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AF131215.7-201ENST00000602443 707 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 BCRP9-201ENST00000605312 388 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC004908.2-201ENST00000609090 574 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 MIR7106-201ENST00000612419 65 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC010133.1-201ENST00000615809 842 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 Z99129.2-201ENST00000619967 314 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AP000676.4-201ENST00000624659 623 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL079305.1-201ENST00000623159 3008 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 MTND4P16-201ENST00000466108 1367 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AC104454.1-201ENST00000421341 1401 ntBASIC2.82□□□□□ -1.96
LHX3Q9UBR4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LHX3Q9UBR4 AL049641.1-201ENST00000441055 1948 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 RNU1-112P-201ENST00000364401 164 ntBASIC2.81□□□□□ -1.96
LHX3Q9UBR4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
LHX3Q9UBR4 CD24P4-201ENST00000382840 243 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms