Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 TPTE2P4-201ENST00000258589 1605 ntBASIC2.43□□□□□ -2.02
USP42Q9H9J4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
USP42Q9H9J4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP42Q9H9J4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP42Q9H9J4 RNU6-661P-201ENST00000362409 107 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 SNORD51-201ENST00000384320 80 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL627390.1-201ENST00000396055 340 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 FGF7P8-201ENST00000402994 292 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU6-193P-201ENST00000410977 107 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 MTND1P23-201ENST00000416931 372 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL353729.1-201ENST00000425044 720 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 ZFAND6P1-201ENST00000434138 605 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC234064.1-201ENST00000436312 247 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 RFC5P1-201ENST00000454419 874 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC104229.1-201ENST00000561364 255 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL049779.4-201ENST00000604500 156 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL031176.1-201ENST00000604554 466 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC092954.1-201ENST00000609121 445 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC091953.2-201ENST00000623979 160 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 U8.10-201ENST00000384260 133 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 SNORD65C-201ENST00000390962 71 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU6-882P-201ENST00000391025 103 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU2-25P-201ENST00000411041 191 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 HMGB3P2-201ENST00000411913 584 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 BTF3P4-201ENST00000418852 495 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC009414.1-201ENST00000427200 443 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 Z82190.1-201ENST00000454534 490 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC010625.1-201ENST00000511296 403 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU6-751P-201ENST00000516382 101 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 RNU6-928P-201ENST00000516876 104 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC008127.2-201ENST00000549925 1075 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 MIR4446-201ENST00000578505 67 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.42□□□□□ -2.02
USP42Q9H9J4 AP000254.1-201ENST00000609934 520 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 AC104307.1-201ENST00000616142 196 ntBASIC2.42□□□□□ -2.02
USP42Q9H9J4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
USP42Q9H9J4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
USP42Q9H9J4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
USP42Q9H9J4 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
USP42Q9H9J4 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 RNU1-105P-201ENST00000363470 161 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 RNU6-1155P-201ENST00000363554 107 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 OR1L1-202ENST00000373686 1083 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 RNA5SP270-201ENST00000411361 118 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 FCF1P2-201ENST00000415284 583 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 AL358453.1-201ENST00000422522 250 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 SUMO1P4-201ENST00000429430 302 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AL121871.1-201ENST00000443413 436 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC007182.2-201ENST00000489251 402 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 ARL2BPP5-201ENST00000523141 481 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 COX6CP5-201ENST00000527162 228 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 RPS3AP23-202ENST00000574601 686 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC2.41□□□□□ -2.02
USP42Q9H9J4 OR4H6P-202ENST00000603819 340 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC025588.4-201ENST00000615802 908 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC084768.2-201ENST00000622736 221 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AL356585.4-201ENST00000623078 1229 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 AC090772.4-201ENST00000623599 362 ntBASIC2.41□□□□□ -2.02
USP42Q9H9J4 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 RNU6-582P-201ENST00000362989 107 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 RNU6-650P-201ENST00000365658 111 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 SET-203ENST00000372688 801 ntTSL 2 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 MIR767-201ENST00000390228 109 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL139098.1-201ENST00000407291 389 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 RPS29P11-201ENST00000496507 171 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 SNORA48.9-201ENST00000516419 162 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 RNU6-885P-201ENST00000516607 104 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
USP42Q9H9J4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms