Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 HMGN1P13-201ENST00000505795 138 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RNU6-559P-201ENST00000516151 98 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 COPS8P3-201ENST00000526024 482 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 HMGB1P14-201ENST00000557424 591 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 RN7SL435P-201ENST00000584418 282 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC245389.1-201ENST00000605141 529 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AC019206.1-201ENST00000621938 425 ntBASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
TRAIPQ9BWF2 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RPS4XP5-202ENST00000449995 1334 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.58-201ENST00000362807 102 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.154-201ENST00000363624 102 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RNY3P1-201ENST00000365085 102 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RNY3-201ENST00000365484 102 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 SNORA70F-201ENST00000384142 135 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.490-201ENST00000384413 102 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RNU6-1297P-201ENST00000384415 104 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AL022722.2-201ENST00000402519 180 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AL357515.1-201ENST00000402967 542 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AL356057.2-201ENST00000403318 432 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 MIR548K-201ENST00000408406 116 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RNU6-293P-201ENST00000411259 106 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AC098614.2-201ENST00000426040 255 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 HMGB3P8-201ENST00000449709 577 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AL135752.1-201ENST00000479477 471 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 RNA5SP73-201ENST00000516744 108 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 MIR5096-201ENST00000583713 70 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AC022726.1-201ENST00000587475 207 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 APOOP1-201ENST00000604695 592 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AC023043.4-201ENST00000612081 449 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 MIR6853-201ENST00000619642 74 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 MIR6810-201ENST00000622701 70 ntBASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TRAIPQ9BWF2 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 Y_RNA.474-201ENST00000384341 102 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 RNU6-1011P-201ENST00000384668 107 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 MIR10A-201ENST00000385043 110 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AL360182.1-201ENST00000397433 468 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 U3.35-201ENST00000408405 208 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AL645608.4-201ENST00000423619 154 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 RPS3AP52-201ENST00000435639 297 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 RPL30P14-201ENST00000482744 348 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC011005.2-201ENST00000487324 359 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 HMGB3P15-201ENST00000507326 574 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC096745.1-201ENST00000509945 370 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC006445.2-201ENST00000510061 472 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC009902.1-201ENST00000519351 183 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 RPL23AP53-201ENST00000521854 457 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC068790.4-201ENST00000602474 263 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AL121932.1-201ENST00000605542 214 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC010378.1-201ENST00000619270 362 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC073308.1-201ENST00000623696 305 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 AF127577.6-201ENST00000623352 2191 ntBASIC5.28□□□□□ -1.56
TRAIPQ9BWF2 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
TRAIPQ9BWF2 AP000542.2-201ENST00000623199 6179 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms