Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RNY3P3-201ENST00000363816 102 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RNA5SP399-201ENST00000364003 117 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RNU4-48P-201ENST00000365559 182 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 Y_RNA.381-201ENST00000365666 102 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 MIR135A2-201ENST00000384854 100 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 U3.19-201ENST00000390893 196 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RNU6-1158P-201ENST00000391167 107 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 UBE2V1P2-201ENST00000397758 440 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 OR2AS1P-201ENST00000427827 319 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 GTF2IP20-201ENST00000431663 360 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RPS15AP9-201ENST00000439856 381 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC016691.1-201ENST00000441321 413 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 SNRPGP6-201ENST00000451124 220 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AL356010.1-201ENST00000456364 102 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 SNORD97-201ENST00000459187 142 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RPL21P8-201ENST00000465083 535 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC008549.1-201ENST00000512900 643 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 SNORA40.12-201ENST00000516329 111 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 Y_RNA.702-201ENST00000516843 96 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 HMGB1P41-201ENST00000520234 440 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC018630.1-201ENST00000541376 925 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 CBX3P5-201ENST00000552017 521 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC011611.1-201ENST00000552179 197 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 RPL23AP87-202ENST00000573039 466 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC090616.5-202ENST00000582111 297 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 MIR4325-201ENST00000583049 90 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AC063943.3-201ENST00000615562 356 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 MIR4275-201ENST00000636486 87 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 AL365361.1-201ENST00000566942 3481 ntBASIC4.63□□□□□ -1.67
SMC1BQ8NDV3 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC073343.1-201ENST00000328239 651 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 U3.15-201ENST00000365398 212 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 SNORA69-201ENST00000383895 132 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RNU6-641P-201ENST00000384006 107 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RNU1-44P-201ENST00000384453 163 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 MT-TL1-201ENST00000386347 75 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RNU2-43P-201ENST00000410306 190 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RPL21P24-201ENST00000413752 448 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 OR51A5P-201ENST00000415429 942 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 MTCO3P12-201ENST00000416718 547 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AL162389.1-201ENST00000449233 177 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RPS29P25-201ENST00000481709 171 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC117522.1-201ENST00000509821 380 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 SNORA20.3-201ENST00000516880 132 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC063950.1-201ENST00000552036 308 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AL121603.1-201ENST00000553815 142 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC010591.1-201ENST00000603941 649 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 TUG1_2.1-201ENST00000614234 87 ntBASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SMC1BQ8NDV3 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 RNA5SP126-201ENST00000365092 109 ntBASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 Y_RNA.367-201ENST00000365544 101 ntBASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 RNA5SP118-201ENST00000410385 109 ntBASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 RNU2-39P-201ENST00000410604 198 ntBASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 COTL1P1-201ENST00000422309 375 ntBASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SMC1BQ8NDV3 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms