Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RN7SL283P-201ENST00000489055 303 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC134050.1-201ENST00000495088 933 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC135721.1-201ENST00000497954 479 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 ATP5F1P5-201ENST00000526403 760 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC010546.1-201ENST00000569391 485 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 TMF1P1-201ENST00000576058 373 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC060771.1-201ENST00000582031 164 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC015871.2-201ENST00000603605 948 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AL596327.1-201ENST00000603629 213 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 RNU4-5P-201ENST00000607255 135 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC093838.1-201ENST00000613014 469 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC006386.1-201ENST00000619436 415 ntBASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
HDDC3Q8N4P3 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RNU6-217P-201ENST00000384164 104 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 MTCO1P17-201ENST00000411522 491 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AL513331.1-201ENST00000411908 397 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RPL7P10-201ENST00000417407 739 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AL451054.2-201ENST00000420896 202 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 NANOGP5-201ENST00000424456 877 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AL358075.3-201ENST00000426289 226 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 FGF7P5-201ENST00000441829 291 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RPL37P4-201ENST00000448908 268 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AL109933.2-201ENST00000452651 260 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RPL31P41-201ENST00000477967 372 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 SEM1P1-201ENST00000506694 209 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RN7SKP132-201ENST00000516001 208 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RNU6-390P-201ENST00000516259 103 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AL391261.3-201ENST00000557194 520 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AC087465.1-201ENST00000560574 245 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 PCMTD1P7-201ENST00000634506 357 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 MTND5P7-201ENST00000413558 1798 ntBASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HDDC3Q8N4P3 AC009902.3-201ENST00000606235 2172 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 SNORA9.2-201ENST00000365361 133 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 SNORA18.3-201ENST00000384122 132 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 RNU6-140P-201ENST00000384566 108 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 RNU6-925P-201ENST00000384629 104 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 RSL24D1P4-201ENST00000400938 484 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 OR2B8P-201ENST00000432841 938 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 MTND3P1-201ENST00000441336 220 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 WASF1P1-201ENST00000447560 1131 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 TPT1P14-201ENST00000448018 505 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 RPS15AP36-201ENST00000492022 382 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 SUMO2P6-201ENST00000505273 288 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 HIGD1AP13-201ENST00000509878 289 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AC091057.3-201ENST00000602684 733 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AC080013.3-201ENST00000606839 578 ntBASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HDDC3Q8N4P3 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AP000776.1-201ENST00000530032 1663 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 RNU6-462P-201ENST00000362659 105 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 MIR627-201ENST00000384979 97 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 RPL7P8-201ENST00000411964 730 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 RAP1BP1-201ENST00000412709 553 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 NDUFB4P5-201ENST00000415445 361 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms