Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL158801.5-201ENST00000623123 465 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC097372.4-201ENST00000625025 466 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 SNORA1.3-201ENST00000384676 136 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AL358075.3-201ENST00000426289 226 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AL451074.3-201ENST00000437709 472 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 Z99714.1-201ENST00000450463 807 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-1073P-201ENST00000517182 106 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AP000676.4-201ENST00000624659 623 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 AP003400.6-201ENST00000624698 740 ntBASIC2.01□□□□□ -2.09
CCDC88AQ3V6T2 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 MIR627-201ENST00000384979 97 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC073264.1-201ENST00000411508 416 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 RPS15AP38-201ENST00000413110 372 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC004022.1-201ENST00000447766 1066 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 TPT1P14-201ENST00000448018 505 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC007395.1-201ENST00000451333 677 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 PPP1R2P5-201ENST00000457256 603 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 CABYRP1-201ENST00000465493 1045 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC109471.1-201ENST00000511631 612 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 SNORA31.20-201ENST00000517111 133 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 OR4G1P-201ENST00000588632 938 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC135178.6-201ENST00000605314 398 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 MIR1264-201ENST00000616374 69 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 SGO1P2-201ENST00000429458 1589 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC093536.2-201ENST00000565257 1406 ntBASIC2□□□□□ -2.09
CCDC88AQ3V6T2 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2□□□□□ -2.09
CCDC88AQ3V6T2 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-263P-201ENST00000363811 107 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-60P-201ENST00000364792 103 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AL136133.1-201ENST00000413694 376 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 TOMM22P6-201ENST00000465035 409 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RPS23P3-201ENST00000470993 430 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC034244.1-201ENST00000507687 207 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RPPH1-2P-201ENST00000516688 293 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 OR8K4P-201ENST00000534608 872 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC125611.2-201ENST00000551907 647 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC007375.1-201ENST00000554513 578 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC024614.2-201ENST00000577584 372 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MIR3935-201ENST00000583472 104 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC245884.12-201ENST00000615364 59 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 ZNF876P-202ENST00000398732 1485 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 U8.1-201ENST00000362843 134 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RNU1-42P-201ENST00000364033 160 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 SNORA51.12-201ENST00000384448 134 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 PAICSP7-201ENST00000419829 962 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MTND1P33-201ENST00000446251 917 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 USP9YP10-201ENST00000454868 628 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC087879.1-201ENST00000474343 374 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-27P-201ENST00000516146 107 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 PSMA3P-201ENST00000555485 635 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 TRAV28-201ENST00000557548 323 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MIR3618-201ENST00000580330 88 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 XIAPP1-201ENST00000603162 600 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 MIR203B-201ENST00000636080 86 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 AC017104.5-201ENST00000637647 639 ntBASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC88AQ3V6T2 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AC007342.9-201ENST00000623877 1385 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-251P-201ENST00000363235 104 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 Y_RNA.112-201ENST00000363250 102 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNA5SP27-201ENST00000363839 119 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 SNORD114-22-201ENST00000365423 72 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-821P-201ENST00000390995 107 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-174P-201ENST00000410406 106 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 RNU6-712P-201ENST00000410558 100 ntBASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC88AQ3V6T2 AL357078.2-201ENST00000416486 427 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms