Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX1P28360 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.08□□□□□ -1.6
MSX1P28360 AC107294.1-201ENST00000609524 467 ntBASIC5.08□□□□□ -1.6
MSX1P28360 MIR8080-201ENST00000622224 89 ntBASIC5.08□□□□□ -1.6
MSX1P28360 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 FAM91A3P-201ENST00000456826 2544 ntBASIC5.08□□□□□ -1.6
MSX1P28360 AL031595.2-201ENST00000624215 19071 ntBASIC5.08□□□□□ -1.6
MSX1P28360 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
MSX1P28360 AC004076.2-201ENST00000620532 3323 ntBASIC5.08□□□□□ -1.6
MSX1P28360 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.08□□□□□ -1.6
MSX1P28360 PHKBP1-201ENST00000450951 1951 ntBASIC5.07□□□□□ -1.6
MSX1P28360 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 Y_RNA.8-201ENST00000362353 102 ntBASIC5.07□□□□□ -1.6
MSX1P28360 RNA5SP443-201ENST00000363083 132 ntBASIC5.07□□□□□ -1.6
MSX1P28360 RNU6-1249P-201ENST00000363237 111 ntBASIC5.07□□□□□ -1.6
MSX1P28360 RNU6-512P-201ENST00000364438 103 ntBASIC5.07□□□□□ -1.6
MSX1P28360 RNU6-882P-201ENST00000391025 103 ntBASIC5.07□□□□□ -1.6
MSX1P28360 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 AC093270.2-201ENST00000486157 792 ntBASIC5.07□□□□□ -1.6
MSX1P28360 AC108043.1-201ENST00000512696 574 ntBASIC5.07□□□□□ -1.6
MSX1P28360 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 BNIP3P5-201ENST00000562290 498 ntBASIC5.07□□□□□ -1.6
MSX1P28360 AC090617.3-201ENST00000573670 475 ntBASIC5.07□□□□□ -1.6
MSX1P28360 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.07□□□□□ -1.6
MSX1P28360 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
MSX1P28360 SRGNP1-201ENST00000603392 451 ntBASIC5.07□□□□□ -1.6
MSX1P28360 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSX1P28360 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC5.07□□□□□ -1.6
MSX1P28360 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.07□□□□□ -1.6
MSX1P28360 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
MSX1P28360 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
MSX1P28360 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
MSX1P28360 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 MIR412-201ENST00000362142 91 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RNU6-1290P-201ENST00000362957 109 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RNU1-146P-201ENST00000364015 165 ntBASIC5.06□□□□□ -1.6
MSX1P28360 SNORA36C-201ENST00000384289 132 ntBASIC5.06□□□□□ -1.6
MSX1P28360 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
MSX1P28360 AC009804.1-201ENST00000400949 179 ntBASIC5.06□□□□□ -1.6
MSX1P28360 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 AL592148.1-201ENST00000413568 445 ntBASIC5.06□□□□□ -1.6
MSX1P28360 TMSB10P2-201ENST00000416049 131 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RPS26P47-201ENST00000427219 348 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RPL21P40-201ENST00000428586 483 ntBASIC5.06□□□□□ -1.6
MSX1P28360 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX1P28360 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.06□□□□□ -1.6
MSX1P28360 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 KNOP1P3-201ENST00000446933 426 ntBASIC5.06□□□□□ -1.6
MSX1P28360 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 AK3P2-201ENST00000507976 429 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RNU2-31P-201ENST00000516954 155 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RNA5SP471-201ENST00000516971 106 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RN7SKP147-201ENST00000517154 244 ntBASIC5.06□□□□□ -1.6
MSX1P28360 RPL21P7-201ENST00000557463 483 ntBASIC5.06□□□□□ -1.6
MSX1P28360 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 AC012616.1-201ENST00000600294 197 ntBASIC5.06□□□□□ -1.6
MSX1P28360 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.06□□□□□ -1.6
MSX1P28360 AC011921.3-201ENST00000605540 361 ntBASIC5.06□□□□□ -1.6
MSX1P28360 AC037487.3-201ENST00000606668 112 ntBASIC5.06□□□□□ -1.6
MSX1P28360 AC104465.1-201ENST00000611365 139 ntBASIC5.06□□□□□ -1.6
MSX1P28360 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.06□□□□□ -1.6
MSX1P28360 AC011476.5-201ENST00000615594 130 ntBASIC5.06□□□□□ -1.6
MSX1P28360 uc_338.7-201ENST00000621834 124 ntBASIC5.06□□□□□ -1.6
MSX1P28360 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 BX322639.1-202ENST00000423987 2213 ntBASIC5.06□□□□□ -1.6
MSX1P28360 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
MSX1P28360 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
MSX1P28360 AL672167.1-205ENST00000641112 3080 ntBASIC5.06□□□□□ -1.6
MSX1P28360 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.06□□□□□ -1.6
MSX1P28360 NCAPGP1-201ENST00000505112 1814 ntBASIC5.06□□□□□ -1.6
MSX1P28360 ADAM24P-201ENST00000398655 2101 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms