Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
USF1P22415 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.26□□□□□ -2.05
USF1P22415 AC008481.1-201ENST00000463278 396 ntBASIC2.26□□□□□ -2.05
USF1P22415 RPL30P9-201ENST00000465586 330 ntBASIC2.26□□□□□ -2.05
USF1P22415 RPL31P41-201ENST00000477967 372 ntBASIC2.26□□□□□ -2.05
USF1P22415 LARP1BP2-201ENST00000486594 519 ntBASIC2.26□□□□□ -2.05
USF1P22415 RNY4P37-201ENST00000516225 96 ntBASIC2.26□□□□□ -2.05
USF1P22415 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.26□□□□□ -2.05
USF1P22415 AC004486.1-201ENST00000546846 233 ntBASIC2.26□□□□□ -2.05
USF1P22415 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.26□□□□□ -2.05
USF1P22415 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.26□□□□□ -2.05
USF1P22415 AC007954.1-201ENST00000554198 494 ntBASIC2.26□□□□□ -2.05
USF1P22415 AC010546.1-201ENST00000569391 485 ntBASIC2.26□□□□□ -2.05
USF1P22415 MIR4446-201ENST00000578505 67 ntBASIC2.26□□□□□ -2.05
USF1P22415 BNIP3P26-201ENST00000600827 554 ntBASIC2.26□□□□□ -2.05
USF1P22415 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.26□□□□□ -2.05
USF1P22415 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.26□□□□□ -2.05
USF1P22415 AC103710.4-201ENST00000609301 899 ntBASIC2.26□□□□□ -2.05
USF1P22415 AL138478.1-201ENST00000612252 832 ntBASIC2.26□□□□□ -2.05
USF1P22415 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USF1P22415 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.26□□□□□ -2.05
USF1P22415 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
USF1P22415 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
USF1P22415 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USF1P22415 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
USF1P22415 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.26□□□□□ -2.05
USF1P22415 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
USF1P22415 CR848007.1-201ENST00000442354 1699 ntBASIC2.25□□□□□ -2.05
USF1P22415 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.25□□□□□ -2.05
USF1P22415 RNU6-560P-201ENST00000364007 108 ntBASIC2.25□□□□□ -2.05
USF1P22415 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
USF1P22415 RNU6-741P-201ENST00000383889 107 ntBASIC2.25□□□□□ -2.05
USF1P22415 AL139039.1-201ENST00000401900 692 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 AL049734.2-201ENST00000441066 616 ntBASIC2.25□□□□□ -2.05
USF1P22415 RPL23AP76-201ENST00000441860 458 ntBASIC2.25□□□□□ -2.05
USF1P22415 PIGFP3-201ENST00000441918 722 ntBASIC2.25□□□□□ -2.05
USF1P22415 WASF1P1-201ENST00000447560 1131 ntBASIC2.25□□□□□ -2.05
USF1P22415 RPS20P20-201ENST00000460498 340 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC003982.1-202ENST00000469928 248 ntBASIC2.25□□□□□ -2.05
USF1P22415 RN7SL297P-201ENST00000483161 293 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC008413.1-201ENST00000511864 177 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC008837.2-201ENST00000513076 418 ntBASIC2.25□□□□□ -2.05
USF1P22415 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 RNU6-276P-201ENST00000516114 96 ntBASIC2.25□□□□□ -2.05
USF1P22415 RNA5SP148-201ENST00000516527 94 ntBASIC2.25□□□□□ -2.05
USF1P22415 DEFB131D-201ENST00000526803 184 ntBASIC2.25□□□□□ -2.05
USF1P22415 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.25□□□□□ -2.05
USF1P22415 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.25□□□□□ -2.05
USF1P22415 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 AL355836.1-201ENST00000555951 870 ntBASIC2.25□□□□□ -2.05
USF1P22415 TRAV28-201ENST00000557548 323 ntBASIC2.25□□□□□ -2.05
USF1P22415 AL512347.1-201ENST00000566420 503 ntBASIC2.25□□□□□ -2.05
USF1P22415 AL161729.4-201ENST00000604650 476 ntBASIC2.25□□□□□ -2.05
USF1P22415 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC093838.1-201ENST00000613014 469 ntBASIC2.25□□□□□ -2.05
USF1P22415 AL590808.1-201ENST00000618696 141 ntBASIC2.25□□□□□ -2.05
USF1P22415 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.25□□□□□ -2.05
USF1P22415 LINC02211-204ENST00000642024 1070 ntBASIC2.25□□□□□ -2.05
USF1P22415 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
USF1P22415 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
USF1P22415 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
USF1P22415 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
USF1P22415 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USF1P22415 RNU6-1207P-201ENST00000384343 107 ntBASIC2.24□□□□□ -2.05
USF1P22415 MIR1261-201ENST00000408659 82 ntBASIC2.24□□□□□ -2.05
USF1P22415 RNU2-25P-201ENST00000411041 191 ntBASIC2.24□□□□□ -2.05
USF1P22415 AL449283.1-202ENST00000418249 604 ntBASIC2.24□□□□□ -2.05
USF1P22415 BX119904.4-201ENST00000424402 301 ntBASIC2.24□□□□□ -2.05
USF1P22415 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.24□□□□□ -2.05
USF1P22415 AL358075.3-201ENST00000426289 226 ntBASIC2.24□□□□□ -2.05
USF1P22415 MYL8P-204ENST00000431574 518 ntBASIC2.24□□□□□ -2.05
USF1P22415 MTND5P14-201ENST00000441481 1267 ntBASIC2.24□□□□□ -2.05
USF1P22415 DDX3P2-201ENST00000446138 111 ntBASIC2.24□□□□□ -2.05
USF1P22415 AP000705.1-201ENST00000454567 350 ntBASIC2.24□□□□□ -2.05
USF1P22415 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.24□□□□□ -2.05
USF1P22415 AP1S2P1-201ENST00000457344 379 ntBASIC2.24□□□□□ -2.05
USF1P22415 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.24□□□□□ -2.05
USF1P22415 RPL37P25-201ENST00000507308 276 ntBASIC2.24□□□□□ -2.05
USF1P22415 RNA5SP291-201ENST00000517222 105 ntBASIC2.24□□□□□ -2.05
USF1P22415 RNU6-840P-201ENST00000517275 65 ntBASIC2.24□□□□□ -2.05
USF1P22415 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC2.24□□□□□ -2.05
USF1P22415 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.24□□□□□ -2.05
USF1P22415 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USF1P22415 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.24□□□□□ -2.05
USF1P22415 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USF1P22415 AC009163.5-201ENST00000575421 637 ntBASIC2.24□□□□□ -2.05
USF1P22415 MIR3670-2-201ENST00000582974 65 ntBASIC2.24□□□□□ -2.05
USF1P22415 MIR3670-1-201ENST00000584160 65 ntBASIC2.24□□□□□ -2.05
USF1P22415 MIR3670-3-201ENST00000584855 65 ntBASIC2.24□□□□□ -2.05
USF1P22415 AC005498.1-201ENST00000592125 465 ntBASIC2.24□□□□□ -2.05
USF1P22415 AC024560.3-201ENST00000608482 349 ntBASIC2.24□□□□□ -2.05
USF1P22415 MIR3670-4-201ENST00000612260 65 ntBASIC2.24□□□□□ -2.05
USF1P22415 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USF1P22415 AC009268.2-201ENST00000621925 457 ntBASIC2.24□□□□□ -2.05
USF1P22415 AC103798.2-201ENST00000624292 632 ntBASIC2.24□□□□□ -2.05
USF1P22415 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 151.9 ms