Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC096745.1-201ENST00000509945 370 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC092436.3-201ENST00000511788 257 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RNU1-6P-201ENST00000516290 144 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 TBCA-207ENST00000520039 157 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA3O43365 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXA3O43365 AL110118.1-201ENST00000553543 400 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXA3O43365 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA3O43365 MIR4277-201ENST00000578298 84 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 FAM60BP-201ENST00000578364 658 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC073539.2-201ENST00000597113 165 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 AC083809.1-201ENST00000615051 472 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.84□□□□□ -1.79
HOXA3O43365 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
HOXA3O43365 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXA3O43365 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXA3O43365 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXA3O43365 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA3O43365 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXA3O43365 ZNF285B-201ENST00000561698 1767 ntBASIC3.84□□□□□ -1.8
HOXA3O43365 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC3.84□□□□□ -1.8
HOXA3O43365 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA3O43365 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HOXA3O43365 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA3O43365 SNORD62.1-201ENST00000362541 86 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 RNU5A-1-201ENST00000362698 116 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 SNORD113.2-201ENST00000364166 89 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC117470.1-201ENST00000381974 330 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 SNORA70F-201ENST00000384142 135 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 RNU6-463P-201ENST00000384340 107 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 Y_RNA.534-201ENST00000384599 112 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 MIR578-201ENST00000384828 96 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 MIR124-3-201ENST00000384866 87 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 RNU6-1106P-201ENST00000390845 107 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 RNU1-82P-201ENST00000390851 165 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC097374.1-203ENST00000400783 485 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AL513331.1-201ENST00000411908 397 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AL358176.2-201ENST00000425769 204 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AL160004.2-201ENST00000432935 350 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.83□□□□□ -1.8
HOXA3O43365 RPL21P23-201ENST00000446654 460 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA3O43365 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA3O43365 RPS23P7-201ENST00000466210 444 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC084198.1-201ENST00000477747 402 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 RPL7P42-201ENST00000481005 679 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA3O43365 RNU6-927P-201ENST00000516199 100 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 Y_RNA.719-201ENST00000517156 106 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 AC009902.1-201ENST00000519351 183 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXA3O43365 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXA3O43365 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 HMGB3P26-201ENST00000560051 582 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 MIR5699-201ENST00000578903 90 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 AL359922.3-201ENST00000624779 1670 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXA3O43365 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 TLK1P1-201ENST00000456760 2440 ntBASIC3.83□□□□□ -1.8
HOXA3O43365 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXA3O43365 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 AC139713.2-214ENST00000642059 1811 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 MAPK10-286ENST00000641208 8747 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXA3O43365 UBE2L2-201ENST00000254302 429 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 Y_RNA.463-201ENST00000384271 102 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 Z99755.1-201ENST00000414048 380 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 AL645568.3-201ENST00000433683 316 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXA3O43365 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 AL135752.1-201ENST00000479477 471 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AP000926.1-201ENST00000479573 241 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXA3O43365 RPS15AP34-201ENST00000487776 387 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 AC110792.1-201ENST00000491826 472 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 RN7SL558P-201ENST00000497468 299 ntBASIC3.82□□□□□ -1.8
HOXA3O43365 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXA3O43365 MLLT10P2-201ENST00000506434 249 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms