Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RPL37P6-201ENST00000460682 294 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AL049874.1-201ENST00000489560 388 ntBASIC4.36□□□□□ -1.71
CBX4O00257 CCDC34P1-201ENST00000507441 517 ntBASIC4.36□□□□□ -1.71
CBX4O00257 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.36□□□□□ -1.71
CBX4O00257 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CBX4O00257 SNORA31.3-201ENST00000516029 96 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AC023632.4-201ENST00000517783 191 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.36□□□□□ -1.71
CBX4O00257 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.36□□□□□ -1.71
CBX4O00257 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.36□□□□□ -1.71
CBX4O00257 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.36□□□□□ -1.71
CBX4O00257 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.36□□□□□ -1.71
CBX4O00257 AL118558.2-201ENST00000556294 238 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.36□□□□□ -1.71
CBX4O00257 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.36□□□□□ -1.71
CBX4O00257 AC093227.2-201ENST00000589357 285 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.36□□□□□ -1.71
CBX4O00257 AP001330.4-201ENST00000604350 154 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AL592436.1-201ENST00000605135 558 ntBASIC4.36□□□□□ -1.71
CBX4O00257 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.36□□□□□ -1.71
CBX4O00257 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.36□□□□□ -1.71
CBX4O00257 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
CBX4O00257 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.36□□□□□ -1.71
CBX4O00257 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CBX4O00257 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CBX4O00257 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CBX4O00257 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CBX4O00257 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
CBX4O00257 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CBX4O00257 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 RNU4-76P-201ENST00000364509 141 ntBASIC4.35□□□□□ -1.71
CBX4O00257 RNA5SP283-201ENST00000365604 119 ntBASIC4.35□□□□□ -1.71
CBX4O00257 RNU6-831P-201ENST00000384548 107 ntBASIC4.35□□□□□ -1.71
CBX4O00257 RNU6-14P-201ENST00000384630 106 ntBASIC4.35□□□□□ -1.71
CBX4O00257 HSPE1P8-201ENST00000406997 288 ntBASIC4.35□□□□□ -1.71
CBX4O00257 BX323014.1-201ENST00000412876 237 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.35□□□□□ -1.71
CBX4O00257 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.35□□□□□ -1.71
CBX4O00257 USP9YP20-201ENST00000419224 558 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.35□□□□□ -1.71
CBX4O00257 AL591704.1-201ENST00000432574 275 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AL591212.2-201ENST00000433923 257 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.35□□□□□ -1.71
CBX4O00257 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.35□□□□□ -1.71
CBX4O00257 PRDX3P3-201ENST00000447765 522 ntBASIC4.35□□□□□ -1.71
CBX4O00257 RNU6-1073P-201ENST00000517182 106 ntBASIC4.35□□□□□ -1.71
CBX4O00257 MYL12AP1-201ENST00000518490 515 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.35□□□□□ -1.71
CBX4O00257 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 AP000763.2-201ENST00000540641 163 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC006064.5-201ENST00000541782 248 ntBASIC4.35□□□□□ -1.71
CBX4O00257 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.35□□□□□ -1.71
CBX4O00257 SCOCP1-201ENST00000554676 349 ntBASIC4.35□□□□□ -1.71
CBX4O00257 MIR3921-201ENST00000577308 85 ntBASIC4.35□□□□□ -1.71
CBX4O00257 MIR4795-201ENST00000584182 89 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.35□□□□□ -1.71
CBX4O00257 AC006130.2-201ENST00000586202 326 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC002545.1-201ENST00000592511 181 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC092747.3-201ENST00000603769 301 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC009570.1-201ENST00000609599 745 ntBASIC4.35□□□□□ -1.71
CBX4O00257 FAM27D1-201ENST00000612308 341 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC019278.1-201ENST00000623516 479 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC112200.1-201ENST00000625015 234 ntBASIC4.35□□□□□ -1.71
CBX4O00257 AC008013.2-202ENST00000637965 364 ntBASIC4.35□□□□□ -1.71
CBX4O00257 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
CBX4O00257 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CBX4O00257 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CBX4O00257 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
CBX4O00257 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.34□□□□□ -1.71
CBX4O00257 NOL8P1-201ENST00000508336 3529 ntBASIC4.34□□□□□ -1.71
CBX4O00257 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 U3.12-201ENST00000364498 214 ntBASIC4.34□□□□□ -1.71
CBX4O00257 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 Y_RNA.414-201ENST00000384011 101 ntBASIC4.34□□□□□ -1.71
CBX4O00257 RNU6-1127P-201ENST00000384580 107 ntBASIC4.34□□□□□ -1.71
CBX4O00257 MIR514A1-201ENST00000385133 98 ntBASIC4.34□□□□□ -1.71
CBX4O00257 POLHP1-201ENST00000411806 470 ntBASIC4.34□□□□□ -1.71
CBX4O00257 RPS20P15-201ENST00000412792 311 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC009237.10-201ENST00000414112 510 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC092809.3-201ENST00000415453 231 ntBASIC4.34□□□□□ -1.71
CBX4O00257 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 MTND1P14-201ENST00000427400 950 ntBASIC4.34□□□□□ -1.71
CBX4O00257 COX6B1P7-201ENST00000430845 235 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.34□□□□□ -1.71
CBX4O00257 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.34□□□□□ -1.71
CBX4O00257 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.34□□□□□ -1.71
CBX4O00257 RPS15AP27-201ENST00000449183 343 ntBASIC4.34□□□□□ -1.71
CBX4O00257 RPS29P19-201ENST00000479709 171 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC083904.1-201ENST00000487828 231 ntBASIC4.34□□□□□ -1.71
CBX4O00257 RN7SL604P-201ENST00000492589 296 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC078817.1-201ENST00000492623 435 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AC078918.1-201ENST00000498515 228 ntBASIC4.34□□□□□ -1.71
CBX4O00257 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CBX4O00257 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms