Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 Y_RNA.182-201ENST00000363880 111 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 RNU1-139P-201ENST00000391307 165 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 RNA5SP56-201ENST00000410277 118 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 OR2AT2P-201ENST00000413438 905 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 RPL30P13-201ENST00000418873 348 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AC064862.4-201ENST00000442180 334 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SL177P-201ENST00000476596 299 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 GMPSP1-201ENST00000514075 579 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AC024940.3-201ENST00000538551 316 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 MIR4679-2-201ENST00000578358 77 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 MIR4443-201ENST00000585052 53 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AC123786.2-201ENST00000603459 275 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AL360181.4-201ENST00000621752 134 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 snoU18.1-201ENST00000629629 71 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AC004076.2-201ENST00000620532 3323 ntBASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.71□□□□□ -1.5
PCDHB3Q9Y5E6 AL353796.1-201ENST00000561542 3241 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC008568.2-201ENST00000623862 2313 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 PARP4P2-201ENST00000446672 3326 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 MIR133A2-201ENST00000347538 102 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 Y_RNA.331-201ENST00000365267 102 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 RNY4P18-201ENST00000391107 89 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 TBCAP2-201ENST00000416175 326 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AL158156.1-201ENST00000422509 473 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 WARS2P1-201ENST00000429678 537 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 BX276092.6-201ENST00000430476 250 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 KNOP1P3-201ENST00000446933 426 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 BX276092.8-201ENST00000455722 250 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 ACA64.4-201ENST00000459070 127 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC005532.2-201ENST00000467154 373 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AP000870.1-201ENST00000472927 406 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC104164.2-201ENST00000496953 495 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SKP288-201ENST00000516227 268 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 Y_RNA.802-201ENST00000614892 130 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC073869.8-201ENST00000641806 335 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 AC079776.5-201ENST00000641920 211 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 SRRM1P3-201ENST00000426911 2678 ntBASIC5.7□□□□□ -1.5
PCDHB3Q9Y5E6 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC009962.1-201ENST00000567327 3813 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 SELENOWP1-201ENST00000322792 252 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 MIR375-201ENST00000362103 64 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 Y_RNA.121-201ENST00000363309 113 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 Y_RNA.230-201ENST00000364348 109 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-76P-201ENST00000384060 104 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 SNORA20-201ENST00000384662 132 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 SNORA40.19-201ENST00000390846 128 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC011742.1-201ENST00000431448 434 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC108161.1-201ENST00000461060 402 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC090602.1-201ENST00000469695 252 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RN7SL629P-201ENST00000489622 285 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC020890.1-201ENST00000491837 504 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RNU6-1114P-201ENST00000516022 107 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RNU7-121P-201ENST00000516604 62 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 CYCSP26-201ENST00000534107 320 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC022404.1-201ENST00000555320 273 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 AC107294.1-201ENST00000609524 467 ntBASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDHB3Q9Y5E6 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms