Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC126182.1-201ENST00000478134 357 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC098799.2-201ENST00000509466 868 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 MRPS36P2-201ENST00000512569 299 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AP002404.1-201ENST00000532005 451 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC023538.1-201ENST00000534576 736 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC090616.3-201ENST00000582184 217 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC034229.4-201ENST00000607861 441 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC097478.2-201ENST00000610572 514 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC245517.5-201ENST00000611529 162 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC140725.3-201ENST00000616193 880 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC023510.2-201ENST00000622162 746 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC091953.5-201ENST00000622919 233 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC000403.1-201ENST00000613696 3585 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 AC073346.2-201ENST00000624724 2058 ntBASIC2.89□□□□□ -1.95
VPS39Q96JC1 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
VPS39Q96JC1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS39Q96JC1 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS39Q96JC1 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS39Q96JC1 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VPS39Q96JC1 RNU6-97P-201ENST00000363387 104 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 SNORA68.1-201ENST00000364537 132 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 U3.20-201ENST00000390909 217 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
VPS39Q96JC1 RSL24D1P4-201ENST00000400938 484 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL513475.1-201ENST00000406602 315 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 SNORD88.1-201ENST00000408684 91 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL953862.1-201ENST00000423016 168 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 BX119904.4-201ENST00000424402 301 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL512649.1-201ENST00000428997 581 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 ZYG11AP1-201ENST00000430329 837 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 MTND1P32-201ENST00000433043 938 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL513043.1-201ENST00000439124 535 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 MTND5P14-201ENST00000441481 1267 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC002381.1-201ENST00000447049 280 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 MTND1P31-201ENST00000449206 961 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 RPL23AP11-201ENST00000475260 469 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 AIG1P1-201ENST00000503376 148 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC093281.2-201ENST00000510153 597 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC009812.2-201ENST00000517657 457 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 OR6C7P-201ENST00000547875 934 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 DUXAP1-201ENST00000556632 463 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 H3F3AP1-201ENST00000559984 334 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC009097.3-201ENST00000563557 1018 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC025281.1-201ENST00000567026 265 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC138761.3-201ENST00000579993 334 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 MIR5195-201ENST00000583555 115 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC011471.1-201ENST00000585766 187 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL353997.4-201ENST00000586196 166 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC012493.2-201ENST00000595083 291 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 NRBF2P5-201ENST00000603087 788 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC012468.1-201ENST00000604888 430 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL136981.2-201ENST00000617319 734 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 AL355493.4-201ENST00000618530 292 ntBASIC2.88□□□□□ -1.95
VPS39Q96JC1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS39Q96JC1 AC135776.4-201ENST00000624300 1904 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL590004.2-201ENST00000404787 371 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 MTCYBP38-201ENST00000417160 1123 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 CYCSP32-201ENST00000440548 321 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 RPL30P9-201ENST00000465586 330 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 RN7SL499P-201ENST00000481141 276 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 SUMO2P6-201ENST00000505273 288 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 COX6CP5-201ENST00000527162 228 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.87□□□□□ -1.95
VPS39Q96JC1 AL391261.3-201ENST00000557194 520 ntBASIC2.87□□□□□ -1.95
VPS39Q96JC1 AC087465.1-201ENST00000560574 245 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms