Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 HSPE1P11-201ENST00000339579 310 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.301-201ENST00000364990 103 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-1013P-201ENST00000384180 107 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-39P-201ENST00000384344 107 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AL359634.1-202ENST00000404721 284 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 HDGFP1-201ENST00000405943 252 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 OR1AA1P-201ENST00000419597 916 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AL031736.2-201ENST00000426573 787 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC005008.1-201ENST00000456151 612 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 RNU7-182P-201ENST00000459009 62 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 RPL21P11-201ENST00000461458 483 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC233702.9-201ENST00000581528 203 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC136443.5-201ENST00000603741 370 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AC080078.3-201ENST00000605407 463 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 AL080274.1-201ENST00000605565 220 ntBASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
USHBP1Q8N6Y0 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
USHBP1Q8N6Y0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC5.09□□□□□ -1.6
USHBP1Q8N6Y0 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
USHBP1Q8N6Y0 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 MTCO1P12-201ENST00000414273 1543 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.22-201ENST00000362492 102 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 U3.11-201ENST00000364476 212 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-1293P-201ENST00000384077 107 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.459-201ENST00000384251 102 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 MIR558-201ENST00000384920 94 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-903P-201ENST00000391270 109 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 MIR1251-201ENST00000408552 70 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 SNORA3C-201ENST00000408792 125 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 ARL5AP1-201ENST00000418991 388 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 Z82205.1-201ENST00000428456 297 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 HLA-N-201ENST00000437516 135 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AL589765.3-201ENST00000446084 462 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RPL23AP11-201ENST00000475260 469 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RN7SL293P-201ENST00000481765 281 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC025554.1-201ENST00000505641 188 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC005741.1-201ENST00000511094 432 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.665-201ENST00000516177 98 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.711-201ENST00000516993 102 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 OR4P1P-201ENST00000530808 1136 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC124068.1-201ENST00000563131 678 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AL121992.2-201ENST00000606262 256 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AL627309.6-201ENST00000606857 840 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 AC123768.4-201ENST00000616244 701 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 RNU6-156P-201ENST00000621869 107 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 MTND4LP32-201ENST00000636111 270 ntBASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.08□□□□□ -1.6
USHBP1Q8N6Y0 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 RNU5A-8P-201ENST00000364102 114 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 SSXP10-201ENST00000402595 565 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AL606923.1-201ENST00000406616 190 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 RNU2-29P-201ENST00000410423 189 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 MED13P1-201ENST00000428342 171 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC104308.1-201ENST00000454621 333 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC108059.3-201ENST00000456388 214 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 Y_RNA.635-201ENST00000459041 101 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC106707.2-201ENST00000484182 374 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 HMGN1P11-201ENST00000508668 303 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 IGKV2-38-201ENST00000517443 247 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 RPL7P20-201ENST00000520308 745 ntBASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.07□□□□□ -1.6
USHBP1Q8N6Y0 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms