Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC026427.2-201ENST00000506228 536 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXA1P49639 RN7SKP21-201ENST00000516503 220 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 Y_RNA.693-201ENST00000516641 110 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 MTND1P35-201ENST00000526739 508 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC091516.1-201ENST00000549191 703 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC005951.2-201ENST00000576282 495 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC008536.2-201ENST00000607284 349 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC004832.5-201ENST00000608677 401 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 MIR6868-201ENST00000611215 58 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC093838.1-201ENST00000613014 469 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 MIR7703-201ENST00000620784 77 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 AC009161.2-201ENST00000624626 138 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.14□□□□□ -1.91
HOXA1P49639 ZNF680P1-201ENST00000436625 1469 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HOXA1P49639 AC110774.1-201ENST00000623567 2018 ntBASIC3.14□□□□□ -1.91
HOXA1P49639 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXA1P49639 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 RNA5SP189-201ENST00000364920 115 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 SNORA23-201ENST00000365128 182 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 Y_RNA.367-201ENST00000365544 101 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 Y_RNA.402-201ENST00000383972 102 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 UBE2V1P2-201ENST00000397758 440 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 RN7SKP123-201ENST00000410732 291 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 USP9YP6-201ENST00000413550 854 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 PPP1R11P2-201ENST00000423543 382 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 RPL7P46-201ENST00000425129 740 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 AL606489.2-201ENST00000433886 234 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 MTATP6P16-201ENST00000434543 526 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC024082.2-201ENST00000434771 238 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 RPL35AP22-201ENST00000436855 335 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 AC016696.1-201ENST00000446949 318 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA1P49639 RPL21P11-201ENST00000461458 483 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC006512.1-201ENST00000468816 291 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 RPL23AP55-201ENST00000498163 452 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXA1P49639 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 RNU6-390P-201ENST00000516259 103 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 SNORA31.22-201ENST00000517204 135 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 AC025678.1-201ENST00000567861 338 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 FAM60BP-201ENST00000578364 658 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 AF038458.1-201ENST00000588406 262 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC093788.1-201ENST00000609356 927 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC017083.3-201ENST00000609955 700 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXA1P49639 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXA1P49639 MIR8059-201ENST00000620427 81 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 MIR3653-201ENST00000625572 110 ntBASIC3.13□□□□□ -1.91
HOXA1P49639 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA1P49639 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXA1P49639 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HOXA1P49639 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HOXA1P49639 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
HOXA1P49639 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
HOXA1P49639 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA1P49639 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA1P49639 RNY4P14-201ENST00000363656 96 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RNU6-108P-201ENST00000365558 107 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RNU6-641P-201ENST00000384006 107 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 RPS4XP8-201ENST00000402039 771 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AL136372.1-201ENST00000403060 228 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 MIR1277-201ENST00000408536 78 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA1P49639 AC114491.1-201ENST00000416095 246 ntBASIC3.12□□□□□ -1.91
HOXA1P49639 USP9YP27-201ENST00000418455 438 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms