Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 RNU1-14P-201ENST00000362759 152 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 Y_RNA.231-201ENST00000364358 102 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
HOXD3P31249 MIR514A2-201ENST00000385131 88 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 MIR514A3-201ENST00000385132 88 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 MT-TD-201ENST00000387419 68 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RNU6-882P-201ENST00000391025 103 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 PPIAP31-201ENST00000405422 495 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 TXNP7-201ENST00000406296 293 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AL606923.1-201ENST00000406616 190 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RNU6-193P-201ENST00000410977 107 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC009237.10-201ENST00000414112 510 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 NDUFB4P5-201ENST00000415445 361 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 TOMM22P1-201ENST00000418578 312 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RAC1P6-201ENST00000423911 575 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD3P31249 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD3P31249 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD3P31249 ERLEC1P1-201ENST00000433806 578 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD3P31249 MRPL50P4-201ENST00000446432 475 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 RPL23AP81-201ENST00000455252 467 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RNU7-180P-201ENST00000459240 63 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RN7SL542P-201ENST00000467147 294 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD3P31249 MTCO3P9-201ENST00000506989 781 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC104806.1-201ENST00000508720 308 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC108078.2-201ENST00000510750 236 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 AC021146.3-201ENST00000511911 260 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RNU4-49P-201ENST00000516080 140 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 Y_RNA.675-201ENST00000516389 149 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 RNU6-1314P-201ENST00000517139 104 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC090281.1-201ENST00000523019 276 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.28□□□□□ -1.88
HOXD3P31249 AC109635.4-202ENST00000531666 412 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 HPRT1P3-201ENST00000539521 576 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 AC093027.1-201ENST00000546698 429 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.28□□□□□ -1.88
HOXD3P31249 SCOCP1-201ENST00000554676 349 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 NCAPGP2-201ENST00000557911 754 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.28□□□□□ -1.88
HOXD3P31249 MIR4719-201ENST00000585233 84 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 MIR4424-201ENST00000585257 86 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 MIR6867-201ENST00000610636 67 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 FAM27D1-201ENST00000612308 341 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 EXOC5P1-201ENST00000510543 1969 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 API5P2-201ENST00000397055 1498 ntBASIC3.28□□□□□ -1.88
HOXD3P31249 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
HOXD3P31249 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.27□□□□□ -1.89
HOXD3P31249 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 AL139276.1-201ENST00000311910 1001 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNA5SP130-201ENST00000364431 114 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNA5SP513-201ENST00000364648 118 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNA5SP235-201ENST00000365411 114 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNU6-1074P-201ENST00000383995 104 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 Y_RNA.535-201ENST00000384612 99 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 SNORD66.1-201ENST00000391230 76 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 AC110754.1-201ENST00000399740 601 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 NDUFS5P1-201ENST00000405668 289 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 MIR1179-201ENST00000408703 91 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RNU2-29P-201ENST00000410423 189 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD3P31249 RPL7AP73-201ENST00000413490 353 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RPL30P2-201ENST00000414021 291 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AL161631.1-201ENST00000417933 486 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AL645937.1-202ENST00000421799 937 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC244098.2-201ENST00000422068 99 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RBMY1KP-201ENST00000423480 476 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AL451062.2-201ENST00000427515 271 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 COX6B1P7-201ENST00000430845 235 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC3.27□□□□□ -1.89
HOXD3P31249 RPL23AP46-201ENST00000438548 490 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 RPS29P7-201ENST00000439662 171 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.27□□□□□ -1.89
HOXD3P31249 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 AL590639.1-201ENST00000456484 337 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.27□□□□□ -1.89
HOXD3P31249 RPL9P32-201ENST00000464118 620 ntBASIC3.27□□□□□ -1.89
HOXD3P31249 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
HOXD3P31249 RPS27AP1-201ENST00000475545 471 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 162 ms