Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TOMM20P2-201ENST00000540082 421 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.83□□□□□ -1.64
COL8A1P27658 RN7SL652P-201ENST00000577769 300 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.83□□□□□ -1.64
COL8A1P27658 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.83□□□□□ -1.64
COL8A1P27658 AC009314.1-201ENST00000603871 304 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC123912.5-201ENST00000605470 343 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 AC087385.3-201ENST00000620477 187 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 RNU6-156P-201ENST00000621869 107 ntBASIC4.83□□□□□ -1.64
COL8A1P27658 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC4.83□□□□□ -1.64
COL8A1P27658 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.83□□□□□ -1.64
COL8A1P27658 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.83□□□□□ -1.64
COL8A1P27658 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL8A1P27658 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL8A1P27658 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL8A1P27658 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.82□□□□□ -1.64
COL8A1P27658 AL078621.3-201ENST00000623707 2042 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 INTS6P1-201ENST00000504674 2530 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL8A1P27658 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.82□□□□□ -1.64
COL8A1P27658 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL8A1P27658 Y_RNA.75-201ENST00000362927 97 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 RN7SKP113-201ENST00000363891 295 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 RNU6-1243P-201ENST00000364028 107 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 SNORD51-201ENST00000384320 80 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 RNU11-4P-201ENST00000391149 133 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 U3.29-201ENST00000391296 212 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 MYL6P5-201ENST00000412707 459 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AL353621.1-201ENST00000418219 243 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AC024067.1-201ENST00000426199 223 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AC053481.1-201ENST00000467217 306 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 RPS26P21-201ENST00000475397 348 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 RPS27AP9-201ENST00000477681 438 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 HMGB1P40-201ENST00000525121 540 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AC115990.1-201ENST00000526957 301 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.82□□□□□ -1.64
COL8A1P27658 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 AC092470.1-201ENST00000546187 132 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 PARP1P2-201ENST00000556806 195 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 MIR4423-201ENST00000580922 80 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.82□□□□□ -1.64
COL8A1P27658 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.82□□□□□ -1.64
COL8A1P27658 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 TUG1_4.1-201ENST00000619464 181 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.82□□□□□ -1.64
COL8A1P27658 AC022164.1-201ENST00000568767 2673 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL8A1P27658 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL8A1P27658 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.82□□□□□ -1.64
COL8A1P27658 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.82□□□□□ -1.64
COL8A1P27658 PWAR1-201ENST00000624188 2414 ntBASIC4.82□□□□□ -1.64
COL8A1P27658 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC4.82□□□□□ -1.64
COL8A1P27658 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.82□□□□□ -1.64
COL8A1P27658 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL8A1P27658 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 AC020633.1-201ENST00000468439 2247 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.81□□□□□ -1.64
COL8A1P27658 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC4.81□□□□□ -1.64
COL8A1P27658 Y_RNA.7-201ENST00000362352 102 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 Y_RNA.136-201ENST00000363444 102 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 RNU4-56P-201ENST00000364700 142 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 Y_RNA.412-201ENST00000384001 104 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL8A1P27658 RNU6-239P-201ENST00000390990 99 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.81□□□□□ -1.64
COL8A1P27658 RN7SKP114-201ENST00000410327 279 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.81□□□□□ -1.64
COL8A1P27658 RPS15AP40-201ENST00000419621 391 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 RPL21P40-201ENST00000428586 483 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 RNU1-88P-201ENST00000459274 128 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AC034236.1-201ENST00000469891 373 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.81□□□□□ -1.64
COL8A1P27658 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.81□□□□□ -1.64
COL8A1P27658 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 AL035690.1-201ENST00000490892 383 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AC020890.1-201ENST00000491837 504 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.81□□□□□ -1.64
COL8A1P27658 RN7SKP288-201ENST00000516227 268 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 RNU7-110P-201ENST00000516891 62 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.81□□□□□ -1.64
COL8A1P27658 MIR548AC-201ENST00000585049 88 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms