Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL5A3P25940 RNFT1P2-201ENST00000443064 757 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RPL17P49-201ENST00000443728 411 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 SSXP4-201ENST00000451349 245 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 HMGN2P13-201ENST00000476476 274 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RPL21P47-201ENST00000483696 477 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC104629.1-201ENST00000494226 508 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 RPL37P25-201ENST00000507308 276 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC121161.1-201ENST00000510606 652 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 DNAJC8P1-201ENST00000554535 372 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.97□□□□□ -2.09
COL5A3P25940 AC104229.1-201ENST00000561364 255 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC073569.3-201ENST00000619055 682 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 AC022079.2-201ENST00000619739 566 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 BX649567.1-201ENST00000642071 1134 ntBASIC1.97□□□□□ -2.09
COL5A3P25940 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
COL5A3P25940 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A3P25940 Y_RNA.178-201ENST00000363832 102 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 Y_RNA.295-201ENST00000364918 102 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 RNU6-481P-201ENST00000384194 107 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 RNA5SP489-201ENST00000410986 109 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 RNU2-71P-201ENST00000411395 189 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.96□□□□□ -2.1
COL5A3P25940 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A3P25940 RPS6P14-201ENST00000425165 719 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AL512637.2-201ENST00000431287 1256 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 RPL7P29-201ENST00000437151 728 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A3P25940 AL035407.2-201ENST00000454090 378 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 RNU1-123P-201ENST00000458950 160 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AC015908.1-201ENST00000478739 476 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A3P25940 SNORA76.2-201ENST00000517095 137 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A3P25940 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.96□□□□□ -2.1
COL5A3P25940 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC1.96□□□□□ -2.1
COL5A3P25940 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.96□□□□□ -2.1
COL5A3P25940 AC121758.2-201ENST00000553271 193 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AL354943.1-201ENST00000572103 781 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 HSPE1P14-201ENST00000605812 302 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
COL5A3P25940 AC253576.2-201ENST00000618815 580 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 DUXAP9-208ENST00000622815 614 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AP003122.6-201ENST00000623831 495 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 AP003400.6-201ENST00000624698 740 ntBASIC1.96□□□□□ -2.1
COL5A3P25940 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL5A3P25940 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A3P25940 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A3P25940 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
COL5A3P25940 RNA5SP393-201ENST00000363423 117 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 RNU6-796P-201ENST00000391086 107 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 HMGB3P2-201ENST00000411913 584 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 HMGB3P31-201ENST00000413333 595 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 VN1R42P-201ENST00000424651 344 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A3P25940 Z77249.1-201ENST00000444622 1175 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A3P25940 OR51B8P-201ENST00000449892 769 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 RPL37P6-202ENST00000464216 403 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A3P25940 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 OR4K8P-201ENST00000578842 1048 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AP001029.3-201ENST00000588063 596 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AL136370.1-201ENST00000608166 691 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AP005229.2-201ENST00000609980 697 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 AC124016.2-201ENST00000610058 665 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 RMST_10.1-201ENST00000616309 154 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL5A3P25940 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
COL5A3P25940 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.95□□□□□ -2.1
COL5A3P25940 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.95□□□□□ -2.1
COL5A3P25940 AC233981.2-201ENST00000611524 1614 ntBASIC1.95□□□□□ -2.1
COL5A3P25940 BX682237.1-201ENST00000415016 335 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 AL158050.1-201ENST00000416077 457 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.94□□□□□ -2.1
COL5A3P25940 MTCO2P1-201ENST00000424648 477 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 RPS7P2-201ENST00000435134 607 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.94□□□□□ -2.1
COL5A3P25940 Z96811.1-201ENST00000445880 108 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 snoU13.7-201ENST00000459220 104 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 TOMM22P6-201ENST00000465035 409 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 AC023424.2-201ENST00000493479 777 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.94□□□□□ -2.1
COL5A3P25940 SEM1P1-201ENST00000506694 209 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.94□□□□□ -2.1
COL5A3P25940 SNORA31.13-201ENST00000516624 135 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 RNU6-334P-201ENST00000517072 102 ntBASIC1.94□□□□□ -2.1
COL5A3P25940 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms