Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU4-80P-201ENST00000363200 141 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 RNA5SP123-201ENST00000363244 119 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 MIR10B-201ENST00000385011 110 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 MIR329-1-201ENST00000385028 80 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 RNU2-50P-201ENST00000410494 143 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 AC099336.2-201ENST00000422457 254 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 BTF3P11-201ENST00000426582 477 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC5.9□□□□□ -1.46
COL9A1P20849 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.9□□□□□ -1.46
COL9A1P20849 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC5.9□□□□□ -1.46
COL9A1P20849 AL450023.1-201ENST00000450868 751 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 EEF1B2P7-201ENST00000451177 676 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC099560.2-201ENST00000457554 255 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 RPL23AP24-201ENST00000458203 385 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 ACA64.4-201ENST00000459070 127 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 snoU13.20-201ENST00000459180 104 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC5.9□□□□□ -1.46
COL9A1P20849 DUTP1-201ENST00000493631 470 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC022616.8-201ENST00000533569 253 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 MIR4270-201ENST00000581799 70 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.9□□□□□ -1.46
COL9A1P20849 AC002545.1-201ENST00000592511 181 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 AC007390.2-201ENST00000606229 3803 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.9□□□□□ -1.46
COL9A1P20849 MIR7703-201ENST00000620784 77 ntBASIC5.9□□□□□ -1.46
COL9A1P20849 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
COL9A1P20849 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL9A1P20849 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL9A1P20849 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.9□□□□□ -1.47
COL9A1P20849 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
COL9A1P20849 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
COL9A1P20849 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC5.9□□□□□ -1.47
COL9A1P20849 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL9A1P20849 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
COL9A1P20849 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC5.9□□□□□ -1.47
COL9A1P20849 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 ZNF658B-201ENST00000602828 3408 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
COL9A1P20849 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL9A1P20849 RNU6-1001P-201ENST00000411265 100 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 MRPS21P2-201ENST00000424704 264 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 SNORA84-201ENST00000459229 133 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.89□□□□□ -1.47
COL9A1P20849 MIR3160-1-201ENST00000577972 85 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 MIR5695-201ENST00000579717 85 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 AC011603.4-201ENST00000611325 277 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL9A1P20849 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 MFSD8-216ENST00000641147 4009 ntBASIC5.89□□□□□ -1.47
COL9A1P20849 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
COL9A1P20849 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
COL9A1P20849 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL9A1P20849 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.88□□□□□ -1.47
COL9A1P20849 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
COL9A1P20849 RNU6-1249P-201ENST00000363237 111 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 RNU1-43P-201ENST00000365052 165 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 RNU6-1144P-201ENST00000384247 104 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
COL9A1P20849 RNA5SP171-201ENST00000391071 115 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 AC108075.1-201ENST00000424692 529 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 FRG2FP-204ENST00000453982 852 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 RPL32P33-201ENST00000487023 394 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.88□□□□□ -1.47
COL9A1P20849 CARD18-203ENST00000532895 422 ntTSL 2 BASIC5.88□□□□□ -1.47
COL9A1P20849 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 DOCK11P1-201ENST00000553480 5932 ntBASIC5.88□□□□□ -1.47
COL9A1P20849 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC5.88□□□□□ -1.47
COL9A1P20849 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
COL9A1P20849 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
COL9A1P20849 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
COL9A1P20849 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL9A1P20849 AL365440.1-201ENST00000436135 2167 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms