Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.4□□□□□ -1.7
HMGB1P09429 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HMGB1P09429 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
HMGB1P09429 RNU6-778P-201ENST00000363269 103 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 SNORD56.5-201ENST00000364281 72 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.4□□□□□ -1.71
HMGB1P09429 RPL26P27-201ENST00000414397 437 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AC245291.1-201ENST00000419501 328 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.4□□□□□ -1.71
HMGB1P09429 RPL7P34-201ENST00000433316 712 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC4.4□□□□□ -1.71
HMGB1P09429 DPPA3P1-201ENST00000448050 469 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.4□□□□□ -1.71
HMGB1P09429 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC093899.1-201ENST00000457984 376 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AP002812.1-201ENST00000495378 474 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC113155.1-201ENST00000511141 769 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 RN7SKP21-201ENST00000516503 220 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC022878.1-201ENST00000530684 149 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AC087499.8-201ENST00000578406 226 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 ELOCP35-201ENST00000604289 336 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AC012468.1-201ENST00000604888 430 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AL137843.1-201ENST00000605078 385 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 RNU1-30P-201ENST00000606575 163 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC011939.3-201ENST00000613686 466 ntBASIC4.4□□□□□ -1.71
HMGB1P09429 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HMGB1P09429 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.4□□□□□ -1.71
HMGB1P09429 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.4□□□□□ -1.71
HMGB1P09429 AC110491.1-201ENST00000562191 2010 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HMGB1P09429 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.39□□□□□ -1.71
HMGB1P09429 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HMGB1P09429 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HMGB1P09429 RNU6-188P-201ENST00000364207 107 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.39□□□□□ -1.71
HMGB1P09429 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.39□□□□□ -1.71
HMGB1P09429 RNU6-817P-201ENST00000391083 104 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 RPS12P24-201ENST00000412619 387 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC017079.2-201ENST00000416102 485 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.39□□□□□ -1.71
HMGB1P09429 AC007283.2-201ENST00000424739 197 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AL589872.1-201ENST00000426602 288 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC091390.1-201ENST00000433904 331 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.39□□□□□ -1.71
HMGB1P09429 USP9YP15-201ENST00000442391 422 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC4.39□□□□□ -1.71
HMGB1P09429 AL133162.1-201ENST00000463228 453 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC128713.1-201ENST00000471495 306 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC103987.1-201ENST00000473394 348 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 RPL39P36-201ENST00000490784 156 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.39□□□□□ -1.71
HMGB1P09429 RNU7-51P-201ENST00000516560 62 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC4.39□□□□□ -1.71
HMGB1P09429 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.39□□□□□ -1.71
HMGB1P09429 MIR3160-1-201ENST00000577972 85 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 MIR4697-201ENST00000582977 78 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 HMGN1P30-201ENST00000589286 268 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 KLKP1-201ENST00000595979 403 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 BNIP3P33-201ENST00000598912 569 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC012065.4-201ENST00000602445 679 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.39□□□□□ -1.71
HMGB1P09429 AC067959.1-201ENST00000604334 379 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC138749.5-201ENST00000611461 208 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC025594.3-201ENST00000613068 790 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC116165.2-201ENST00000616705 206 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AC092140.2-201ENST00000618027 521 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 U2.21-201ENST00000637295 81 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 AP000553.6-201ENST00000641242 118 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 ELF2P3-201ENST00000445099 1506 ntBASIC4.39□□□□□ -1.71
HMGB1P09429 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HMGB1P09429 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HMGB1P09429 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HMGB1P09429 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.38□□□□□ -1.71
HMGB1P09429 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
HMGB1P09429 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
HMGB1P09429 RN7SKP263-201ENST00000411194 309 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 HMGB3P20-201ENST00000417997 600 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 HMGB1P9-201ENST00000429856 646 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.38□□□□□ -1.71
HMGB1P09429 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.38□□□□□ -1.71
HMGB1P09429 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.38□□□□□ -1.71
HMGB1P09429 AC126182.1-201ENST00000478134 357 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HMGB1P09429 DUXAP5-201ENST00000529668 529 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
HMGB1P09429 MIR5685-201ENST00000579080 79 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AL355598.1-201ENST00000604169 202 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AC068831.8-201ENST00000620171 435 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AP003485.2-201ENST00000623636 610 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AC068724.3-201ENST00000625906 87 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 AL512643.1-201ENST00000635735 524 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
HMGB1P09429 ADAM3A-203ENST00000461344 2157 ntBASIC4.38□□□□□ -1.71
HMGB1P09429 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms