Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.23□□□□□ -1.89
LMX1BO60663 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 SCARNA24.1-201ENST00000516465 137 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 RN7SKP277-201ENST00000516895 283 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.23□□□□□ -1.89
LMX1BO60663 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 AP000907.2-201ENST00000530827 353 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 CBX3P5-201ENST00000552017 521 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 HIF1AP1-201ENST00000553642 175 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 OR4T1P-201ENST00000554933 911 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL359212.1-201ENST00000556608 614 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.23□□□□□ -1.89
LMX1BO60663 AC034105.3-201ENST00000565294 442 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 AC087499.8-201ENST00000578406 226 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 KLKP1-201ENST00000595979 403 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL162413.1-201ENST00000603198 110 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC103710.2-201ENST00000609912 942 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.23□□□□□ -1.89
LMX1BO60663 AC091925.2-201ENST00000625059 256 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.23□□□□□ -1.89
LMX1BO60663 AC099654.10-201ENST00000640395 161 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
LMX1BO60663 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.23□□□□□ -1.89
LMX1BO60663 AL139811.1-201ENST00000424779 2299 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.23□□□□□ -1.89
LMX1BO60663 SAGE2P-201ENST00000420011 2126 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 AC011460.1-201ENST00000636268 1834 ntBASIC3.23□□□□□ -1.89
LMX1BO60663 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
LMX1BO60663 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
LMX1BO60663 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
LMX1BO60663 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
LMX1BO60663 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL138713.1-201ENST00000624026 2130 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
LMX1BO60663 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LMX1BO60663 RNU6-1120P-201ENST00000362988 108 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 RNU6-97P-201ENST00000363387 104 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 RNU6-108P-201ENST00000365558 107 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 RNU6-456P-201ENST00000384493 107 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 MIR19A-201ENST00000384878 82 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
LMX1BO60663 RN7SKP285-201ENST00000410137 318 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 RNU2-15P-201ENST00000410692 191 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 TIMM9P1-201ENST00000436122 256 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 RPS29P31-201ENST00000446147 164 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 BX276092.4-201ENST00000452056 248 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 PMCHL2-203ENST00000457791 237 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 UBDP1-202ENST00000457888 382 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 snoU13.8-201ENST00000458890 104 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 RPS3AP50-201ENST00000487064 803 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC079382.1-201ENST00000493346 557 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC106872.2-201ENST00000494303 480 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 UBE2CP3-201ENST00000502715 450 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC114786.4-201ENST00000508771 728 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC074250.1-201ENST00000511117 192 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 FTH1P9-201ENST00000513251 355 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 SNORA40.12-201ENST00000516329 111 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC055876.1-202ENST00000567053 138 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.22□□□□□ -1.89
LMX1BO60663 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC063943.3-201ENST00000615562 356 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 uc_338.12-201ENST00000616344 181 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 AC006504.8-201ENST00000621046 635 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC010338.1-201ENST00000621823 717 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 YWHAEP7-203ENST00000622054 312 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC138649.5-201ENST00000637456 137 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.22□□□□□ -1.89
LMX1BO60663 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
LMX1BO60663 MTND5P1-201ENST00000445440 1375 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 AC090229.1-201ENST00000590983 1609 ntBASIC3.22□□□□□ -1.89
LMX1BO60663 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
LMX1BO60663 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
LMX1BO60663 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.89
LMX1BO60663 HSPA8P1-201ENST00000425843 1833 ntBASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms