Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL17A1Q9UMD9 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 SNORA38.1-201ENST00000364172 131 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 RNU6-1322P-201ENST00000364309 107 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 RNU6-187P-201ENST00000384139 106 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 Y_RNA.527-201ENST00000384573 102 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 HDGFP1-201ENST00000405943 252 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 RNA5SP146-201ENST00000410743 123 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 ISCA1P6-201ENST00000427740 390 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 LSM1P1-201ENST00000438629 273 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC006499.2-201ENST00000513470 337 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 RNU4-49P-201ENST00000516080 140 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC055876.1-202ENST00000567053 138 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 RMST_9.1-201ENST00000619945 193 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC138649.5-201ENST00000637456 137 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC005005.4-201ENST00000623789 16698 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 ASNSP3-201ENST00000451989 1306 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 MUC2-202ENST00000613187 4845 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC010300.1-201ENST00000600671 5134 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 AC022031.1-201ENST00000585985 2593 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 CKAP2P1-201ENST00000555477 2049 ntBASIC5.79□□□□□ -1.48
COL17A1Q9UMD9 NMD3P1-201ENST00000439704 1488 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 SNORD50B-201ENST00000364995 70 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 Y_RNA.447-201ENST00000384184 113 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 MTCYBP4-201ENST00000401524 249 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 RNU6-1068P-201ENST00000410958 103 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC234782.4-201ENST00000417646 1048 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC005517.2-201ENST00000424673 553 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 RPL36AP53-201ENST00000432891 316 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC005019.1-201ENST00000436455 431 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC104332.1-201ENST00000440471 797 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 SNORD105B-201ENST00000458770 79 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 S100A11P2-201ENST00000467589 312 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 RNU6-488P-201ENST00000515918 99 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC103843.2-201ENST00000530523 682 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC090502.2-201ENST00000549267 280 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC022968.1-201ENST00000567372 442 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 AL161734.1-201ENST00000609720 557 ntBASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC5.78□□□□□ -1.48
COL17A1Q9UMD9 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 Y_RNA.556-201ENST00000384677 113 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AL121972.1-201ENST00000402023 252 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RBMY1KP-201ENST00000423480 476 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RPL23AP16-201ENST00000441715 421 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 MTCO1P27-201ENST00000448269 226 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 TRGVB-201ENST00000453257 471 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RNU7-152P-201ENST00000458982 64 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RNU6-329P-201ENST00000459618 107 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 MTCO3P44-201ENST00000510977 541 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RN7SKP295-201ENST00000517264 153 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 RANP9-201ENST00000519957 271 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AC022695.1-201ENST00000522089 237 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AC104984.5-201ENST00000586878 94 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AL451044.1-201ENST00000604867 238 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 AC104010.1-201ENST00000616889 150 ntBASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
COL17A1Q9UMD9 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms