Protein–RNA interactions for Protein: Q9ULD4

BRPF3, Bromodomain and PHD finger-containing protein 3, humanhuman

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRPF3Q9ULD4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 AL450472.3-201ENST00000615578 367 ntBASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 AC007998.5-201ENST00000622938 237 ntBASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 AC008013.2-202ENST00000637965 364 ntBASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
BRPF3Q9ULD4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 RNU6-1249P-201ENST00000363237 111 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 Y_RNA.197-201ENST00000364004 102 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 RN7SKP216-201ENST00000411050 312 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC004866.2-201ENST00000438285 481 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 RPL23AP89-201ENST00000439324 255 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 OR1H1P-201ENST00000448731 937 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC091685.2-201ENST00000454924 864 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 VN1R105P-201ENST00000486595 910 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AL391358.1-201ENST00000605342 190 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AL158032.1-201ENST00000605401 106 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC009570.1-201ENST00000609599 745 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC008121.3-201ENST00000618726 433 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AL445363.3-201ENST00000623080 671 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC091953.3-201ENST00000623220 236 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 AC244517.12-201ENST00000623581 663 ntBASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
BRPF3Q9ULD4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 SNORD70.1-201ENST00000391007 85 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AC110754.1-201ENST00000399740 601 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 RNU6-712P-201ENST00000410558 100 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 VDAC1P9-201ENST00000412766 841 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 MTND1P17-201ENST00000448961 204 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 MRPS31P2-201ENST00000451581 518 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 DYNLL1P5-201ENST00000467158 270 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AC092324.1-201ENST00000468671 324 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 RPL23AP2-201ENST00000471227 466 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 TRBV1-201ENST00000476502 284 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 RNU1-6P-201ENST00000516290 144 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 EDDM3DP-201ENST00000554692 434 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 U2.17-201ENST00000611454 95 ntBASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
BRPF3Q9ULD4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 Y_RNA.145-201ENST00000363527 102 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 RNU6-1188P-201ENST00000363795 107 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 SNORD116-11-201ENST00000383882 92 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 RNA5SP87-201ENST00000384155 118 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 SSXP9-201ENST00000417503 292 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 SKA2P1-201ENST00000425592 390 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AF228730.2-201ENST00000438784 848 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 HMGB3P22-202ENST00000451823 572 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC005921.1-201ENST00000510589 286 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AP006587.4-201ENST00000526053 529 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 MIR5690-201ENST00000583739 73 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 ATP1B3P1-201ENST00000605365 821 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC019193.3-201ENST00000609144 554 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 MIR6853-201ENST00000619642 74 ntBASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
BRPF3Q9ULD4 AC007823.1-201ENST00000569932 1566 ntBASIC5.5□□□□□ -1.53
BRPF3Q9ULD4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRPF3Q9ULD4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
BRPF3Q9ULD4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.5□□□□□ -1.53
BRPF3Q9ULD4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
BRPF3Q9ULD4 RNA5SP189-201ENST00000364920 115 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms