Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 DHFRP3-201ENST00000455595 559 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 PPP1R2P5-201ENST00000457256 603 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RNU6-953P-201ENST00000459154 107 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RN7SL354P-201ENST00000469282 294 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC079140.5-201ENST00000507882 310 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC117522.3-201ENST00000507974 584 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC112206.3-201ENST00000514578 389 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RNU6-277P-201ENST00000516272 106 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 RPL7P20-201ENST00000520308 745 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC126177.3-201ENST00000551839 688 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC084783.1-201ENST00000565846 910 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AL355375.2-201ENST00000574825 175 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AC021646.1-201ENST00000605469 484 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AL359547.2-201ENST00000615810 418 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 AP005019.3-201ENST00000620418 560 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.89□□□□□ -1.79
VSX1Q9NZR4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VSX1Q9NZR4 SDAD1P2-201ENST00000441308 2028 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 SNORA63-201ENST00000363450 132 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 U3.15-201ENST00000365398 212 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RNU6-1227P-201ENST00000383981 107 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.414-201ENST00000384011 101 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RNU6-76P-201ENST00000384060 104 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RNU6-831P-201ENST00000384548 107 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 MIR93-201ENST00000385024 80 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 snosnR66.1-201ENST00000391095 99 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL139095.3-201ENST00000419672 1203 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RBMY1KP-201ENST00000423480 476 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC005534.2-201ENST00000431047 433 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL591704.1-201ENST00000432574 275 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL132765.1-201ENST00000434165 553 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 NDUFA5P4-201ENST00000436704 385 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL353748.1-201ENST00000440753 474 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL162395.1-201ENST00000457882 422 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 VN1R104P-201ENST00000505115 1009 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 SNORA70.14-201ENST00000516205 110 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 RNU6-390P-201ENST00000516259 103 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CYP4A43P-201ENST00000568156 121 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AL161616.1-201ENST00000611867 286 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 AC135507.2-201ENST00000612443 309 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 C2orf27A-204ENST00000623058 969 ntBASIC3.88□□□□□ -1.79
VSX1Q9NZR4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VSX1Q9NZR4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 AC004925.1-201ENST00000624256 2706 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 Y_RNA.212-201ENST00000364177 102 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNVU1-6-201ENST00000364688 164 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 SMIM11P1-201ENST00000369586 178 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNU6-550P-201ENST00000391057 101 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 RNU6-817P-201ENST00000391083 104 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 SNORD66.1-201ENST00000391230 76 ntBASIC3.87□□□□□ -1.79
VSX1Q9NZR4 EIF4E2P1-201ENST00000393781 255 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 149.1 ms