Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 TAAR7P-201ENST00000436141 242 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 Z96811.1-201ENST00000445880 108 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 TPT1P14-201ENST00000448018 505 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL162389.1-201ENST00000449233 177 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 OR6C5P-201ENST00000452388 923 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 ATG12P2-201ENST00000456830 416 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 RPS29P12-201ENST00000460178 152 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 RPS20P20-201ENST00000460498 340 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC072039.1-201ENST00000477611 581 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 APOOP4-201ENST00000513530 597 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 RNU6-840P-201ENST00000517275 65 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 IGKV2-26-201ENST00000518305 343 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 OR5G4P-201ENST00000525251 760 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL139344.1-201ENST00000605228 195 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC005000.2-201ENST00000605468 310 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC063944.3-201ENST00000609969 533 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 TUG1_2.1-201ENST00000614234 87 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL356321.1-201ENST00000621360 228 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC091965.5-201ENST00000624785 342 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 AC006378.2-201ENST00000623178 2476 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL049781.1-201ENST00000623195 3585 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 OR4G2P-202ENST00000641004 1759 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MTND4P16-201ENST00000466108 1367 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL139281.1-201ENST00000422120 335 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC005019.1-201ENST00000436455 431 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL831737.1-201ENST00000441288 271 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 ATP5C1P1-201ENST00000441945 895 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 RPL7P36-201ENST00000444633 681 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 UBBP3-201ENST00000445497 241 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 Z99127.3-201ENST00000448158 395 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC025518.1-201ENST00000479856 347 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC006445.2-201ENST00000510061 472 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 RN7SKP57-201ENST00000517248 293 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 SCARNA20.6-201ENST00000517251 106 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MTATP6P15-201ENST00000527233 835 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 ZNF321P-202ENST00000550843 495 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC124947.2-202ENST00000552735 133 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AL355836.1-201ENST00000555951 870 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AP001004.1-201ENST00000582468 324 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MIR3609-201ENST00000582661 80 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC013553.2-201ENST00000604244 589 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC107214.2-201ENST00000608204 634 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC017037.3-201ENST00000625016 472 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 SCARNA15.3-201ENST00000626315 122 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 SCARNA4.1-201ENST00000628597 123 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MIR3651-201ENST00000630427 90 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AP003122.5-201ENST00000527668 3766 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 AC092125.1-201ENST00000562568 1995 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 CCT4P2-201ENST00000233836 1548 ntBASIC2.92□□□□□ -1.94
DDX28Q9NUL7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.92□□□□□ -1.94
DDX28Q9NUL7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.91□□□□□ -1.94
DDX28Q9NUL7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms