Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 RNU6-270P-201ENST00000364131 105 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 SNORA4.1-201ENST00000364263 144 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 SNORA23-201ENST00000365128 182 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 RNU1-109P-201ENST00000383960 147 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 RNU6-198P-201ENST00000384258 104 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 RNU6-516P-201ENST00000411381 104 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 HMGN2P35-201ENST00000412164 270 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 TXNL1P1-201ENST00000429528 554 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC093156.1-201ENST00000440382 670 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 MTCO1P27-201ENST00000448269 226 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AL109741.2-201ENST00000455561 343 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC008571.1-201ENST00000467232 300 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 RPS27AP9-201ENST00000477681 438 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 RNA5SP216-201ENST00000516111 123 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AL355836.1-201ENST00000555951 870 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 HMGB1P6-201ENST00000569046 646 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AL592221.1-201ENST00000605266 382 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AP000484.1-201ENST00000620067 1252 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 OR4G3P-201ENST00000633500 913 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS35Q96QK1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS35Q96QK1 AP003122.5-201ENST00000527668 3766 ntBASIC2.81□□□□□ -1.96
VPS35Q96QK1 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VPS35Q96QK1 DDX10P1-201ENST00000448545 1933 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC007785.2-201ENST00000598627 1916 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS35Q96QK1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS35Q96QK1 RNU6-853P-201ENST00000364306 107 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 RNA5SP139-201ENST00000364340 117 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 RNU6-1035P-201ENST00000384477 107 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 U3.20-201ENST00000390909 217 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 NDUFB4P4-201ENST00000404822 243 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VPS35Q96QK1 RAP1BP1-201ENST00000412709 553 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 Z85995.1-201ENST00000415547 335 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AL451074.5-201ENST00000415894 435 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 AP000542.1-201ENST00000448473 371 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 snoU13.28-201ENST00000459235 104 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 RAC1P5-201ENST00000512182 576 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC034159.1-201ENST00000513885 583 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 RNU6-826P-201ENST00000516827 104 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AP002748.2-201ENST00000528671 348 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 AL049838.1-201ENST00000563647 981 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 RPL23AP84-201ENST00000571193 464 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC083760.1-201ENST00000589621 670 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC073308.1-201ENST00000623696 305 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC079597.1-201ENST00000624306 508 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS35Q96QK1 AC099063.3-201ENST00000642066 185 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AL138713.1-201ENST00000624026 2130 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 AL049641.1-201ENST00000441055 1948 ntBASIC2.8□□□□□ -1.96
VPS35Q96QK1 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AC010680.1-201ENST00000590024 3590 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VPS35Q96QK1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS35Q96QK1 RNU6-462P-201ENST00000362659 105 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 RNU1-39P-201ENST00000383897 165 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 MIR181B1-201ENST00000385240 110 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL139095.1-201ENST00000404326 391 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 MIR320C1-201ENST00000408566 88 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 RNU6-757P-201ENST00000410334 100 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 UBE2V1P13-201ENST00000436983 439 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 AL513043.1-201ENST00000439124 535 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.79□□□□□ -1.96
VPS35Q96QK1 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VPS35Q96QK1 ATG12P2-201ENST00000456830 416 ntBASIC2.79□□□□□ -1.96
VPS35Q96QK1 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms