Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AC005332.5-201ENST00000591222 2919 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 AL161912.2-201ENST00000565707 3007 ntBASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USHBP1Q8N6Y0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.144-201ENST00000363521 113 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 RNA5SP51-201ENST00000364750 119 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 SNORA33.2-201ENST00000365413 134 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.367-201ENST00000365544 101 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 SNORA9-201ENST00000384215 133 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-1297P-201ENST00000384415 104 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 MIR183-201ENST00000384958 110 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 MIR454-201ENST00000390180 115 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC069218.2-201ENST00000411665 344 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 HSPD1P21-201ENST00000436541 245 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 PRDX3P3-201ENST00000447765 522 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 PPIAP3-201ENST00000450588 505 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL590639.1-201ENST00000456484 337 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC021382.1-201ENST00000483523 359 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 MTCO1P29-201ENST00000496868 288 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 FAM206BP-201ENST00000510179 541 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-559P-201ENST00000516151 98 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 NARSP2-201ENST00000518524 679 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 SUMO2P20-201ENST00000520803 283 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC011979.2-201ENST00000527568 352 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC008737.2-201ENST00000599446 118 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AP001330.4-201ENST00000604350 154 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC104662.1-201ENST00000604448 511 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL031666.3-201ENST00000609320 1006 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC096577.2-201ENST00000611455 153 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 uc_338.15-201ENST00000615470 191 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC084781.2-201ENST00000615568 161 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC010205.1-201ENST00000616668 449 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL773545.4-201ENST00000637262 310 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AL513478.4-201ENST00000641636 310 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC004972.1-201ENST00000623934 2209 ntBASIC5.11□□□□□ -1.59
USHBP1Q8N6Y0 AC107027.3-201ENST00000565095 3473 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RNU4-66P-201ENST00000365199 138 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RNU4-20P-201ENST00000365601 151 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-38P-201ENST00000384085 107 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 GEMIN8P3-201ENST00000445417 720 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AL451050.1-201ENST00000450126 415 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RNU6-333P-201ENST00000459117 107 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 MTND5P16-201ENST00000460269 1703 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 MTND4P17-201ENST00000470444 350 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC126389.1-201ENST00000477436 290 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AL163540.1-201ENST00000485382 386 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RN7SKP219-201ENST00000516825 296 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 Y_RNA.718-201ENST00000517110 102 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 SNORA25.17-201ENST00000517184 124 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC024224.1-201ENST00000538284 609 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 BTBD10P1-201ENST00000549824 1352 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 POLR3GP2-201ENST00000588366 668 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC245517.5-201ENST00000611529 162 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC015967.1-201ENST00000619893 476 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 AC138305.3-201ENST00000624988 240 ntBASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
USHBP1Q8N6Y0 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms