Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CNKSR3Q6P9H4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 DEFB109C-201ENST00000382575 264 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 DEFB109B-201ENST00000382656 264 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU1-63P-201ENST00000383902 164 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 Y_RNA.574-201ENST00000384766 95 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU6ATAC-201ENST00000408749 126 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU2-29P-201ENST00000410423 189 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU4-61P-201ENST00000411243 107 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 VDAC1P9-201ENST00000412766 841 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 ARL5AP1-201ENST00000418991 388 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 PSMA2P3-201ENST00000429685 675 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 HMGB1P12-201ENST00000438594 598 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AF228730.2-201ENST00000438784 848 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RPS29P7-201ENST00000439662 171 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC104073.1-201ENST00000451988 151 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU7-182P-201ENST00000459009 62 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RPS27P27-201ENST00000498779 255 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 SNORA25.10-201ENST00000515926 124 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU6-388P-201ENST00000517012 105 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 RNU6-389P-201ENST00000517048 105 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC092470.1-201ENST00000546187 132 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC060771.1-201ENST00000582031 164 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 HMGB2P1-201ENST00000591146 634 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC012409.4-201ENST00000612923 249 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 uc_338.34-201ENST00000617467 174 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC015914.2-201ENST00000618167 288 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 ZNF33CP-201ENST00000432492 2030 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CNKSR3Q6P9H4 AC121333.1-201ENST00000567488 2709 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 Y_RNA.482-201ENST00000384377 111 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 UBE2V1P2-201ENST00000397758 440 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 MIR548I3-201ENST00000408378 149 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 MIR548I1-201ENST00000408810 149 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RPL31P2-201ENST00000413849 377 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AL590233.1-201ENST00000430017 456 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RPL23AP25-201ENST00000430973 463 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RPL37P6-202ENST00000464216 403 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 FTH1P21-201ENST00000512179 511 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RNA5SP230-201ENST00000517039 122 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RN7SKP234-201ENST00000517173 224 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC090136.1-201ENST00000520009 240 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 MTCO3P23-201ENST00000561363 289 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 MIR4703-201ENST00000577728 79 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC104662.1-201ENST00000604448 511 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 PNPT1P2-201ENST00000456768 2050 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 SAGE4P-201ENST00000442271 3381 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 AC130650.2-201ENST00000618736 2403 ntBASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
CNKSR3Q6P9H4 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms