| HES3 | Q5TGS1 | PTP4A1P7-201 | ENST00000423476 | 514 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | RPL7P37-201 | ENST00000425095 | 738 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | RAC1P8-201 | ENST00000427086 | 527 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | BLOC1S2P1-201 | ENST00000428431 | 301 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | ZMYM4-AS1-201 | ENST00000432683 | 459 nt | TSL 2 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | LSM1P1-201 | ENST00000438629 | 273 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | RAC1P7-201 | ENST00000445367 | 377 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AL592447.1-201 | ENST00000447592 | 540 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | SUMO2P2-201 | ENST00000456482 | 255 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC013828.1-201 | ENST00000481845 | 158 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | NAA50-206 | ENST00000493454 | 964 nt | TSL 2 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC008696.2-201 | ENST00000503323 | 825 nt | TSL 3 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | LINC02198-201 | ENST00000504280 | 810 nt | TSL 3 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC096734.1-201 | ENST00000511279 | 1128 nt | TSL 1 (best) BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | TBCAP3-201 | ENST00000512475 | 312 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | MEF2C-AS1-208 | ENST00000512585 | 741 nt | TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | SCARNA16.3-201 | ENST00000516595 | 184 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | SNORA48.10-201 | ENST00000516965 | 160 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC109466.1-211 | ENST00000519327 | 496 nt | TSL 3 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC087272.1-201 | ENST00000523624 | 533 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | OR4R1P-201 | ENST00000529879 | 463 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | CR383656.7-201 | ENST00000548164 | 174 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC073591.1-201 | ENST00000552736 | 597 nt | TSL 3 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC011494.1-201 | ENST00000596454 | 237 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC008739.2-201 | ENST00000597006 | 317 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC007953.2-201 | ENST00000603299 | 193 nt | TSL 5 BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AL354696.1-201 | ENST00000614652 | 497 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC011330.2-201 | ENST00000621680 | 635 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | AC093875.1-201 | ENST00000623688 | 504 nt | BASIC | 2.09 | □□□□□ -2.07 | | |
| HES3 | Q5TGS1 | NETO1-202 | ENST00000397929 | 1849 nt | TSL 1 (best) BASIC | 2.09 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC080128.1-201 | ENST00000474389 | 1917 nt | BASIC | 2.09 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC006378.2-201 | ENST00000623178 | 2476 nt | BASIC | 2.09 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | GPBP1-201 | ENST00000264779 | 1786 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC026241.1-201 | ENST00000517873 | 2142 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | KERA-201 | ENST00000266719 | 2162 nt | APPRIS P1 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC022336.2-201 | ENST00000568966 | 2538 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | Y_RNA.4-201 | ENST00000362333 | 112 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-492P-201 | ENST00000363035 | 104 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | SUGT1P1-201 | ENST00000379514 | 476 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MIR217-201 | ENST00000384817 | 110 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | ANAPC10P1-201 | ENST00000395991 | 556 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU2-43P-201 | ENST00000410306 | 190 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-575P-201 | ENST00000411326 | 105 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | PSMA6P3-201 | ENST00000428242 | 164 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | GNGT1-202 | ENST00000428834 | 731 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RPL17P35-201 | ENST00000432217 | 549 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MTND4P15-201 | ENST00000437913 | 1033 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | LINC01986-201 | ENST00000440867 | 590 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL158053.1-201 | ENST00000441503 | 453 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNF2P1-201 | ENST00000442955 | 1010 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MOB1AP2-201 | ENST00000446060 | 614 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | USP9YP34-201 | ENST00000453983 | 808 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL049714.1-201 | ENST00000466686 | 347 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | TOPORSLP1-202 | ENST00000469756 | 969 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | COX7A2P2-201 | ENST00000505291 | 250 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | BMPR1B-AS1-201 | ENST00000510795 | 511 nt | TSL 3 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC027338.1-201 | ENST00000514840 | 825 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | TET2-AS1-201 | ENST00000515414 | 537 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNA5SP200-201 | ENST00000516360 | 103 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MTCO1P47-201 | ENST00000523889 | 1271 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | C14orf105-204 | ENST00000526336 | 598 nt | TSL 4 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC118942.1-202 | ENST00000529081 | 578 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | OR5BN1P-201 | ENST00000532955 | 829 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC004486.1-201 | ENST00000546846 | 233 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MIR4446-201 | ENST00000578505 | 67 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AP001004.1-201 | ENST00000582468 | 324 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC105224.1-201 | ENST00000587055 | 421 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RPAP2P1-201 | ENST00000603626 | 1168 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AP000942.3-201 | ENST00000603702 | 160 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL035411.2-201 | ENST00000604022 | 421 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AP000787.2-201 | ENST00000604432 | 568 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC092954.1-201 | ENST00000609121 | 445 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL161734.1-201 | ENST00000609720 | 557 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC004852.3-201 | ENST00000614131 | 326 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL161629.2-201 | ENST00000615347 | 275 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC010297.1-201 | ENST00000623948 | 149 nt | BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | TECRL-202 | ENST00000507440 | 2876 nt | TSL 5 BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | KLRC1-202 | ENST00000359151 | 1407 nt | APPRIS P4 TSL 1 (best) BASIC | 2.08 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | COMMD8-201 | ENST00000381571 | 1469 nt | APPRIS P1 TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | TAS2R13-201 | ENST00000390677 | 1637 nt | APPRIS P1 BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-1180P-201 | ENST00000364935 | 107 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | DNAH14-203 | ENST00000366848 | 929 nt | TSL 1 (best) BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-198P-201 | ENST00000384258 | 104 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MIR506-201 | ENST00000384998 | 124 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-1140P-201 | ENST00000410517 | 106 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC096533.1-201 | ENST00000411645 | 353 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RPL7L1P10-201 | ENST00000427790 | 463 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL590383.1-201 | ENST00000428602 | 75 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL356867.1-201 | ENST00000429623 | 299 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL512637.2-201 | ENST00000431287 | 1256 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | MTCYBP15-201 | ENST00000433123 | 1127 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC024082.2-201 | ENST00000434771 | 238 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC092393.1-201 | ENST00000439625 | 742 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | GACAT1-202 | ENST00000441383 | 540 nt | TSL 4 BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC009237.8-201 | ENST00000445492 | 379 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC007677.1-201 | ENST00000445757 | 515 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AC016751.2-201 | ENST00000453206 | 280 nt | TSL 5 BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | AL441989.1-201 | ENST00000454204 | 382 nt | TSL 3 BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | RNU6-420P-201 | ENST00000458780 | 107 nt | BASIC | 2.07 | □□□□□ -2.08 | | |
| HES3 | Q5TGS1 | LINC01997-201 | ENST00000494900 | 429 nt | TSL 2 BASIC | 2.07 | □□□□□ -2.08 | | |