Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTAPP1-201ENST00000489154 819 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 MTCO1P31-201ENST00000506355 492 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC114786.4-201ENST00000508771 728 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC114797.1-201ENST00000514003 728 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA3P55318 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA3P55318 OR5AK1P-201ENST00000524837 922 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 TRAV11-201ENST00000539512 339 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC011611.5-201ENST00000552477 578 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 EIF4BP1-201ENST00000554881 351 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 MTCYBP27-201ENST00000555160 670 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA3P55318 AC090897.2-201ENST00000581715 130 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC1.45□□□□□ -2.18
FOXA3P55318 BNIP3P33-201ENST00000598912 569 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC1.45□□□□□ -2.18
FOXA3P55318 AP001521.1-201ENST00000609150 300 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AL592148.2-201ENST00000612210 372 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC010378.1-201ENST00000619270 362 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AL158801.5-201ENST00000623123 465 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AL356266.1-201ENST00000623311 483 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 AC090772.4-201ENST00000623599 362 ntBASIC1.45□□□□□ -2.18
FOXA3P55318 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
FOXA3P55318 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 SNORA5B-201ENST00000363786 132 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 RNU6-234P-201ENST00000365229 104 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 XGY1-201ENST00000381172 446 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AL023284.1-201ENST00000403956 276 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 BTF3P7-201ENST00000407097 488 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 SNORA11.4-201ENST00000408823 129 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 RNU2-20P-201ENST00000410425 191 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 HMGB1P49-201ENST00000418882 569 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 HMGB1P9-201ENST00000429856 646 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA3P55318 RPL23AP16-201ENST00000441715 421 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC005002.1-201ENST00000447458 540 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA3P55318 ATG12P2-201ENST00000456830 416 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 PPP1R2P5-201ENST00000457256 603 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 MTCO1P42-201ENST00000457379 726 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 RPS29P20-201ENST00000489592 171 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 OR4G11P-201ENST00000492842 939 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 BLNK-209ENST00000495266 440 ntTSL 5 BASIC1.44□□□□□ -2.18
FOXA3P55318 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
FOXA3P55318 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.44□□□□□ -2.18
FOXA3P55318 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC010186.2-204ENST00000537668 439 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC1.44□□□□□ -2.18
FOXA3P55318 CYCSP2-201ENST00000558168 301 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AC026464.5-201ENST00000562497 722 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 MIR4529-201ENST00000578110 78 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 MIR3200-201ENST00000580767 85 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AC013553.2-201ENST00000604244 589 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AC005000.2-201ENST00000605468 310 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.44□□□□□ -2.18
FOXA3P55318 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC1.44□□□□□ -2.18
FOXA3P55318 AP003485.2-201ENST00000623636 610 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AP003400.5-201ENST00000624827 617 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AC025263.3-201ENST00000622965 1396 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AC008555.8-201ENST00000623602 2168 ntBASIC1.44□□□□□ -2.18
FOXA3P55318 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA3P55318 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.43□□□□□ -2.18
FOXA3P55318 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA3P55318 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
FOXA3P55318 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA3P55318 RNU1-91P-201ENST00000364746 163 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA3P55318 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA3P55318 RNU6-1083P-201ENST00000384022 107 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC1.43□□□□□ -2.18
FOXA3P55318 AL031679.1-201ENST00000400616 525 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 RPS4XP8-201ENST00000402039 771 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AL356057.1-202ENST00000402263 756 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AL024474.1-201ENST00000404655 591 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AL133384.1-201ENST00000412744 351 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA3P55318 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.43□□□□□ -2.18
FOXA3P55318 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AIMP1P2-201ENST00000425294 312 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AC006946.1-201ENST00000429106 328 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.43□□□□□ -2.18
FOXA3P55318 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AL831737.1-201ENST00000441288 271 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 HIGD1AP2-201ENST00000446367 280 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
FOXA3P55318 AL136380.1-201ENST00000447970 162 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.43□□□□□ -2.18
FOXA3P55318 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.43□□□□□ -2.18
FOXA3P55318 AC068781.1-201ENST00000488231 618 ntBASIC1.43□□□□□ -2.18
FOXA3P55318 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms