Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC093831.2-201ENST00000624393 3427 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD4P09016 Y_RNA.359-201ENST00000365498 102 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 RNU6-769P-201ENST00000384407 104 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 RNU6-878P-201ENST00000384578 110 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 U3.29-201ENST00000391296 212 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MIR1305-201ENST00000408300 86 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 RNA5SP344-201ENST00000411081 104 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MTATP6P27-201ENST00000416987 621 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 MTCO2P5-201ENST00000422621 426 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD4P09016 AC007742.1-201ENST00000425789 329 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 AL590233.1-201ENST00000430017 456 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MTCYBP45-201ENST00000435243 565 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 RPL37P21-201ENST00000435890 276 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 ELOCP26-201ENST00000436067 329 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 Z75741.1-201ENST00000446793 314 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AP000542.1-201ENST00000448473 371 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 SUMO2P2-201ENST00000456482 255 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 RNA5SP269-201ENST00000459032 137 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC011825.1-201ENST00000484967 388 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC022447.3-201ENST00000506865 495 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD4P09016 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC079140.3-201ENST00000511111 550 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AF131216.2-201ENST00000512316 564 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC093677.1-201ENST00000514414 678 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 AP002748.2-201ENST00000528671 348 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC007536.1-201ENST00000533382 349 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 EIF4BP1-201ENST00000554881 351 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC034268.2-201ENST00000571784 482 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 LARP7P3-201ENST00000579888 337 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MIR4307-201ENST00000582802 84 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 AP000254.1-201ENST00000609934 520 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC027807.2-201ENST00000616099 408 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 SNORD39.4-201ENST00000620099 78 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC022149.2-201ENST00000621061 203 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 AC093591.3-201ENST00000634516 308 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 AC002546.1-201ENST00000588041 2504 ntBASIC2.98□□□□□ -1.93
HOXD4P09016 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD4P09016 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
HOXD4P09016 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
HOXD4P09016 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.98□□□□□ -1.93
HOXD4P09016 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
HOXD4P09016 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXD4P09016 MTND5P19-201ENST00000424872 1794 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AC097714.1-201ENST00000511272 1647 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HOXD4P09016 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HOXD4P09016 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 RNU6-28P-201ENST00000362378 107 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 U3.11-201ENST00000364476 212 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 RNU4-91P-201ENST00000364778 135 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 RNU6-744P-201ENST00000365557 107 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 SNORA75-201ENST00000384158 137 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 RNU6-1316P-201ENST00000384242 108 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 Y_RNA.510-201ENST00000384511 114 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HOXD4P09016 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
HOXD4P09016 DEFB108C-201ENST00000400154 252 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD4P09016 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC099677.1-201ENST00000420575 175 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 COTL1P1-201ENST00000422309 375 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD4P09016 AL592447.1-201ENST00000447592 540 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 snoU109.4-201ENST00000458953 143 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 RPS26P21-201ENST00000475397 348 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 AC093278.1-201ENST00000494700 600 ntBASIC2.97□□□□□ -1.93
HOXD4P09016 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD4P09016 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXD4P09016 HMGB3P15-201ENST00000507326 574 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms