Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.91□□□□□ -1.94
CLDN3O15551 MTND3P19-201ENST00000603825 345 ntBASIC2.91□□□□□ -1.94
CLDN3O15551 AC245297.2-201ENST00000610119 565 ntBASIC2.91□□□□□ -1.94
CLDN3O15551 AC004852.3-201ENST00000614131 326 ntBASIC2.91□□□□□ -1.94
CLDN3O15551 AC002064.3-201ENST00000623448 346 ntBASIC2.91□□□□□ -1.94
CLDN3O15551 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
CLDN3O15551 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.91□□□□□ -1.94
CLDN3O15551 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.9□□□□□ -1.94
CLDN3O15551 AC010680.1-201ENST00000590024 3590 ntBASIC2.9□□□□□ -1.94
CLDN3O15551 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.9□□□□□ -1.94
CLDN3O15551 Y_RNA.192-201ENST00000363977 102 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 RNU6-114P-201ENST00000384704 105 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 MIR196B-201ENST00000384852 84 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 RNU4-22P-201ENST00000411058 166 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 USP9YP33-201ENST00000412220 421 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 ARL5AP4-201ENST00000430731 512 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 USP9YP35-201ENST00000435696 412 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 SNRPEP7-201ENST00000438350 220 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 EXOSC3P1-201ENST00000448649 500 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AL109933.2-201ENST00000452651 260 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 RPL21P134-201ENST00000453468 483 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.9□□□□□ -1.95
CLDN3O15551 HMGB1P36-201ENST00000487709 576 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLDN3O15551 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.9□□□□□ -1.95
CLDN3O15551 AC116353.3-201ENST00000511215 249 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.9□□□□□ -1.95
CLDN3O15551 AC024589.1-201ENST00000512207 263 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLDN3O15551 SETP2-201ENST00000553886 926 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AC009712.1-201ENST00000564938 316 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 MIR4635-201ENST00000583759 79 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AC091057.2-201ENST00000602594 792 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AL627309.6-201ENST00000606857 840 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.9□□□□□ -1.95
CLDN3O15551 AC107075.1-201ENST00000613695 314 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 CR381653.2-201ENST00000624041 768 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.9□□□□□ -1.95
CLDN3O15551 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.9□□□□□ -1.95
CLDN3O15551 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CLDN3O15551 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.9□□□□□ -1.95
CLDN3O15551 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
CLDN3O15551 AC138915.1-201ENST00000565427 1685 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CLDN3O15551 RNU1-105P-201ENST00000363470 161 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RNU6-621P-201ENST00000364752 109 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 SNORD116.1-201ENST00000365628 92 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.89□□□□□ -1.95
CLDN3O15551 MIR122-201ENST00000385044 85 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 MIR34A-201ENST00000385130 110 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL21P75-201ENST00000396599 483 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL21P28-201ENST00000401418 483 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AL592114.1-201ENST00000403842 483 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CLDN3O15551 TPMTP3-201ENST00000411928 735 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC099548.1-201ENST00000421443 426 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL7P37-201ENST00000425095 738 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.89□□□□□ -1.95
CLDN3O15551 AC007919.1-201ENST00000429380 217 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPS25P9-201ENST00000435591 252 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.89□□□□□ -1.95
CLDN3O15551 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.89□□□□□ -1.95
CLDN3O15551 UBBP3-201ENST00000445497 241 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.89□□□□□ -1.95
CLDN3O15551 RPL23AP20-201ENST00000447965 421 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 PAXBP1P1-201ENST00000449315 447 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 GSTA11P-201ENST00000452866 669 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL21P39-201ENST00000463605 483 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL21P93-201ENST00000480465 489 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RN7SL432P-201ENST00000484057 298 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC087190.1-201ENST00000484462 480 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 LARP1BP2-201ENST00000486594 519 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC093591.1-201ENST00000491435 481 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPS27P26-201ENST00000494583 239 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 RPL21P16-201ENST00000495531 483 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC119751.5-201ENST00000514077 770 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.89□□□□□ -1.95
CLDN3O15551 AP003497.1-201ENST00000528472 562 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
CLDN3O15551 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CLDN3O15551 AC005951.2-201ENST00000576282 495 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC019159.1-201ENST00000605094 187 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CLDN3O15551 AC009269.6-201ENST00000621778 588 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 AC092608.2-201ENST00000624427 218 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 UGP2-231ENST00000627474 264 ntTSL 5 BASIC2.89□□□□□ -1.95
CLDN3O15551 DDX10P1-201ENST00000448545 1933 ntBASIC2.89□□□□□ -1.95
CLDN3O15551 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.88□□□□□ -1.95
CLDN3O15551 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLDN3O15551 AC099786.3-201ENST00000565735 1410 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 SNORA23-201ENST00000365128 182 ntBASIC2.88□□□□□ -1.95
CLDN3O15551 RNU6-744P-201ENST00000365557 107 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms