Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RN7SKP224-201ENST00000364140 325 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-48P-201ENST00000384161 107 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.464-201ENST00000384282 110 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 SNORA70E-201ENST00000384492 135 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.506-201ENST00000384494 102 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 U3.42-201ENST00000408746 214 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 BX842559.1-201ENST00000419615 532 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RPS29P14-201ENST00000431518 171 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL590399.6-201ENST00000446396 307 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RPS11P1-201ENST00000451072 473 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 IFNWP4-201ENST00000453148 294 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC007686.1-201ENST00000488511 463 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 MRPS33P2-201ENST00000507850 322 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RNU4-71P-201ENST00000516258 113 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-840P-201ENST00000517275 65 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC000068.2-201ENST00000608816 460 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL591516.1-201ENST00000611326 274 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 AC139769.1-204ENST00000472297 1931 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 LINC01355-201ENST00000566551 5444 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC023421.1-201ENST00000590535 1785 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 EOGT-210ENST00000615922 1931 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP319-201ENST00000362768 119 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RN7SKP95-201ENST00000362860 303 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RNY1-201ENST00000364228 113 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP223-201ENST00000365174 120 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.352-201ENST00000365439 102 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RN7SKP81-201ENST00000365603 331 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-933P-201ENST00000384424 107 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 MIR589-201ENST00000385238 99 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 SNORA69.1-201ENST00000390904 137 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC005522.1-201ENST00000395416 346 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 GLULP6-201ENST00000399502 913 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AL133388.1-201ENST00000404509 287 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 MIR1298-201ENST00000408783 112 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RPL7AP73-201ENST00000413490 353 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RPS15AP6-201ENST00000420703 385 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 HMGB1P27-201ENST00000431429 603 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RPL23AP22-201ENST00000437556 453 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 Z92846.1-201ENST00000456203 268 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RN7SL51P-201ENST00000468230 285 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC012158.1-204ENST00000483430 465 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RN7SL652P-201ENST00000577769 300 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AC068790.4-201ENST00000602474 263 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 FO393422.1-201ENST00000603908 708 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 U73479.1-201ENST00000618062 168 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AL031601.2-202ENST00000622650 282 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 AP001148.1-201ENST00000624124 2359 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 MAPK10-328ENST00000641553 4009 ntBASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HIF3AQ9Y2N7 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.78□□□□□ -1.65
HIF3AQ9Y2N7 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 PRO1804-201ENST00000623780 2050 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms