Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 CUL1P1-201ENST00000509510 2425 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-541P-201ENST00000384709 110 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-1248P-201ENST00000391096 64 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RPL11P3-201ENST00000395256 523 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-1025P-201ENST00000410629 104 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-1001P-201ENST00000411265 100 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AL391219.1-201ENST00000422570 483 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 GAPDHP59-201ENST00000435908 267 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC009963.3-201ENST00000458090 486 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 TOMM22P4-201ENST00000511318 336 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 NACAP3-201ENST00000552100 481 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AC108081.1-201ENST00000604358 221 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 AP001052.1-201ENST00000626421 99 ntBASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
VPS9D1Q9Y2B5 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC008555.8-201ENST00000623602 2168 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RNU1-65P-201ENST00000363919 148 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-1180P-201ENST00000364935 107 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 Y_RNA.388-201ENST00000383919 113 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-1145P-201ENST00000384246 107 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-821P-201ENST00000390995 107 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AIMP1P2-201ENST00000425294 312 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 KRT8P51-201ENST00000438938 274 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 TIMM8BP2-201ENST00000445940 251 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RNU1-88P-201ENST00000459274 128 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 Y_RNA.651-201ENST00000459380 103 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC012158.1-204ENST00000483430 465 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RN7SL170P-201ENST00000487098 295 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 RPL23AP49-201ENST00000492925 468 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC090022.1-201ENST00000546569 311 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 MIR5695-201ENST00000579717 85 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 uc_338.26-201ENST00000612659 160 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 AC111152.1-202ENST00000635848 339 ntBASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.92□□□□□ -1.46
VPS9D1Q9Y2B5 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 RNA5SP234-201ENST00000363916 119 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 SNORD14B-201ENST00000364533 90 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 RNA5SP279-201ENST00000365513 117 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 RNU6-281P-201ENST00000384212 103 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 MIR329-1-201ENST00000385028 80 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 CYCSP12-201ENST00000437729 300 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AL663074.2-201ENST00000440621 479 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 KNOP1P3-201ENST00000446933 426 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AL450023.1-201ENST00000450868 751 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 HIGD1AP3-201ENST00000515857 278 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 MIR3154-201ENST00000577829 84 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC002545.1-201ENST00000592511 181 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AL136131.3-201ENST00000607600 188 ntBASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS9D1Q9Y2B5 AC245014.3-201ENST00000618589 347 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms