Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
CCDC87Q9NVE4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.59□□□□□ -1.52
CCDC87Q9NVE4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC87Q9NVE4 SAMMSON-213ENST00000641336 1521 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AP000542.2-201ENST00000623199 6179 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.144-201ENST00000363521 113 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RNU6-1127P-201ENST00000384580 107 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AL139397.2-201ENST00000404529 772 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RNU6ATAC-201ENST00000408749 126 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 VDAC1P9-201ENST00000412766 841 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 SNAP23P1-201ENST00000433229 246 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 MTND1P17-201ENST00000448961 204 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 ELOCP24-201ENST00000456370 334 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RPL37P6-202ENST00000464216 403 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AC026801.2-201ENST00000515352 425 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RNU6-988P-201ENST00000519081 107 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AC093012.1-202ENST00000549403 582 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AC053481.4-201ENST00000583164 216 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 AL354984.3-201ENST00000604803 325 ntBASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC87Q9NVE4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RNU6-1252P-201ENST00000363054 104 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RNU6-1188P-201ENST00000363795 107 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RNU6-593P-201ENST00000364716 112 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC117470.1-201ENST00000381974 330 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 SNORD116-11-201ENST00000383882 92 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC092447.6-201ENST00000414578 210 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 ATG3P1-201ENST00000419507 911 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RPL23AP83-201ENST00000434984 473 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC005019.1-201ENST00000436455 431 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RPS15AP27-201ENST00000449183 343 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RPL7P43-201ENST00000478876 753 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RPL21P93-201ENST00000480465 489 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 VN1R105P-201ENST00000486595 910 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 COPS8P3-201ENST00000526024 482 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC018630.1-201ENST00000541376 925 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC138761.3-201ENST00000579993 334 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC006272.2-201ENST00000594725 163 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AL034351.1-201ENST00000605288 668 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC019193.3-201ENST00000609144 554 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 uc_338.22-201ENST00000622722 187 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC244517.12-201ENST00000623581 663 ntBASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC87Q9NVE4 AC107068.1-201ENST00000563286 4218 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 SMIM11P1-201ENST00000369586 178 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 SNORA22B-201ENST00000383876 138 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.399-201ENST00000383955 105 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 Y_RNA.459-201ENST00000384251 102 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 MIR200C-201ENST00000384980 68 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 RNU6-954P-201ENST00000411355 107 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 CTSL3P-202ENST00000412179 788 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AL157831.1-201ENST00000426134 473 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 RPL23AP89-201ENST00000439324 255 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AL121871.1-201ENST00000443413 436 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 RN7SL812P-201ENST00000493791 279 ntBASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC87Q9NVE4 MTCYBP40-201ENST00000509390 1135 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms