Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 AC034105.4-201ENST00000568304 277 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 DUXAP4-201ENST00000603046 613 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 AC103710.2-201ENST00000609912 942 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 AC005344.1-201ENST00000613391 459 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 AC110994.2-201ENST00000635481 492 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 AC022336.2-201ENST00000568966 2538 ntBASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HERPUD2Q9BSE4 HSPA8P1-201ENST00000425843 1833 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RNU5E-1-201ENST00000362477 120 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RNU6-511P-201ENST00000363496 107 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 SNORA14A-201ENST00000364773 135 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 MIR30B-201ENST00000384850 88 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AL138878.1-201ENST00000405131 347 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 Z98941.1-201ENST00000407764 100 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 SNORA3.3-201ENST00000408712 125 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC127391.1-201ENST00000411737 98 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC017079.2-201ENST00000416102 485 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 MRPL50P2-201ENST00000416821 482 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 ZNF863P-201ENST00000426746 417 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AP000936.2-201ENST00000447151 681 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 MTCO3P20-201ENST00000454926 688 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC010099.1-201ENST00000455434 375 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC092798.1-201ENST00000458542 409 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RNU6-956P-201ENST00000458868 103 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC087588.1-201ENST00000462203 316 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC093534.1-201ENST00000504977 132 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RNU7-51P-201ENST00000516560 62 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RNU1-45P-201ENST00000517191 141 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 RANP9-201ENST00000519957 271 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AP006245.1-201ENST00000522549 120 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AMZ2P1-203ENST00000565833 850 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 MIR1254-2-201ENST00000579553 63 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AL133173.2-201ENST00000614270 90 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 AL589994.2-201ENST00000621124 579 ntBASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
HERPUD2Q9BSE4 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AP004289.2-201ENST00000444413 1457 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 SNORD56.2-201ENST00000363242 71 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 Y_RNA.245-201ENST00000364493 95 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 SNORD116-1-201ENST00000384335 95 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 RNU6-140P-201ENST00000384566 108 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 SNORA57.3-201ENST00000411095 141 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 ZNF90P2-204ENST00000419323 1075 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC069157.1-201ENST00000421749 137 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC104651.1-201ENST00000427559 735 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 HMGB3P11-201ENST00000440127 604 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 NEFMP1-201ENST00000443423 1006 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 DDX3P2-201ENST00000446138 111 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 RN7SL542P-201ENST00000467147 294 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 RNA5SP164-201ENST00000516533 110 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC023632.4-201ENST00000517783 191 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AP000873.5-201ENST00000533906 236 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 PIGPP4-201ENST00000584447 307 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC091304.9-201ENST00000612091 226 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC034102.8-201ENST00000615146 484 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 AC004777.1-201ENST00000624317 287 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 PISRT1-201ENST00000626175 531 ntBASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
HERPUD2Q9BSE4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.8□□□□□ -1.8
HERPUD2Q9BSE4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
HERPUD2Q9BSE4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
HERPUD2Q9BSE4 MIR423-201ENST00000362201 94 ntBASIC3.8□□□□□ -1.8
HERPUD2Q9BSE4 RNU6-1167P-201ENST00000363227 94 ntBASIC3.8□□□□□ -1.8
HERPUD2Q9BSE4 Y_RNA.201-201ENST00000364052 96 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms