Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL445687.1-201ENST00000439946 251 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC002381.1-201ENST00000447049 280 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 ATG12P2-201ENST00000456830 416 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 snoU109.3-201ENST00000459477 145 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 RN7SL499P-201ENST00000481141 276 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 SUMO2P6-201ENST00000505273 288 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 CDC42P4-201ENST00000510507 563 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC021451.1-201ENST00000523498 1129 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AGGF1P5-201ENST00000567900 919 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 VN1R92P-201ENST00000598511 928 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL160237.3-201ENST00000604114 1013 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AL162713.1-201ENST00000604480 262 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 uc_338.25-201ENST00000613756 156 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 LRRC77P-213ENST00000637727 880 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 AC092447.7-201ENST00000422212 1621 ntBASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.85□□□□□ -1.95
ZNF540Q8NDQ6 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-1207P-201ENST00000384343 107 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 RNU6-754P-201ENST00000391166 107 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 MIR888-201ENST00000401186 77 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AL513331.1-201ENST00000411908 397 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC005300.1-201ENST00000428401 373 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 SUMO1P4-201ENST00000429430 302 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 EXOSC3P1-201ENST00000448649 500 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 RN7SL633P-201ENST00000488974 297 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC093752.1-206ENST00000511823 336 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 RNA5SP471-201ENST00000516971 106 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC091163.3-201ENST00000518269 1144 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 MTND1P24-201ENST00000552175 861 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AL512347.1-201ENST00000566420 503 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC090616.3-201ENST00000582184 217 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 MIR3117-201ENST00000584034 78 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC083760.1-201ENST00000589621 670 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AL606834.2-201ENST00000602954 668 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 AC104985.3-201ENST00000623479 597 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 MTND1P37-201ENST00000636562 264 ntBASIC2.84□□□□□ -1.95
ZNF540Q8NDQ6 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.84□□□□□ -1.96
ZNF540Q8NDQ6 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
ZNF540Q8NDQ6 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
ZNF540Q8NDQ6 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 ZNF29P-201ENST00000225587 168 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-140P-201ENST00000384566 108 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 U3.20-201ENST00000390909 217 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC110754.1-201ENST00000399740 601 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AL590084.2-201ENST00000401481 382 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AL109755.1-201ENST00000401791 649 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 BX323014.1-201ENST00000412876 237 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 UBE2V1P13-201ENST00000436983 439 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 SNRPEP7-201ENST00000438350 220 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC108734.1-201ENST00000439549 399 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC112653.1-201ENST00000443851 386 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 RPL26P9-201ENST00000457466 433 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 MRPS17P3-201ENST00000465453 385 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 KC877373.1-201ENST00000479066 408 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 NRON-201ENST00000517270 370 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 SCARNA11.3-201ENST00000517276 130 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC010376.1-201ENST00000522101 334 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AP000889.1-201ENST00000530968 660 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 MIR5004-201ENST00000579078 107 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 BNIP3P26-201ENST00000600827 554 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 RPL12P50-201ENST00000603116 116 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 MIR7112-201ENST00000616126 65 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC008147.4-201ENST00000617570 1204 ntBASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms