Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.85
CLIP4Q8N3C7 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CLIP4Q8N3C7 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 Y_RNA.38-201ENST00000362617 102 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 Y_RNA.381-201ENST00000365666 102 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RNU1-39P-201ENST00000383897 165 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 SNORD51-201ENST00000384320 80 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RNU6-821P-201ENST00000390995 107 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC068050.1-201ENST00000394891 380 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 ZNF90P2-204ENST00000419323 1075 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RSL24D1P6-201ENST00000426934 401 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC137499.1-201ENST00000427602 88 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 FTH1P1-201ENST00000437933 532 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 SNRPEP8-201ENST00000442866 260 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RPL21P89-201ENST00000444021 467 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 HMGN2P7-201ENST00000456186 273 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RNU6-420P-201ENST00000458780 107 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 MTCO2P29-201ENST00000465212 189 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AP000926.1-201ENST00000479573 241 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RN7SL323P-201ENST00000494712 295 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AL139099.1-201ENST00000497398 403 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC020893.1-201ENST00000502452 580 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC108043.1-201ENST00000512696 574 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 MTCO1P35-201ENST00000515270 228 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 SNORA20.3-201ENST00000516880 132 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AL359212.1-201ENST00000556608 614 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 MIR4738-201ENST00000579134 87 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC091135.1-201ENST00000585943 307 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC025449.1-201ENST00000603896 529 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC007621.1-201ENST00000604544 437 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC063943.3-201ENST00000615562 356 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 U73479.1-201ENST00000618062 168 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AL713922.2-201ENST00000619384 716 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC002550.2-201ENST00000621246 394 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 FP236240.3-201ENST00000623061 327 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 AC009033.1-201ENST00000624279 431 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 MIR3662-201ENST00000637030 95 ntBASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CLIP4Q8N3C7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 OR1S2-201ENST00000302592 978 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNU6-1120P-201ENST00000362988 108 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNY3P13-201ENST00000365542 102 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RPS4XP8-201ENST00000402039 771 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 SNORA3.3-201ENST00000408712 125 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNU2-47P-201ENST00000410649 186 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNU4-78P-201ENST00000410940 126 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RAB28P1-201ENST00000411517 641 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 HMGN1P24-201ENST00000412282 298 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 USP12PX-201ENST00000432383 1057 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RPL23AP30-201ENST00000432419 501 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 NDUFB1P1-201ENST00000435191 180 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC093156.1-201ENST00000440382 670 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 HSFY6P-201ENST00000445573 403 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 UBDP1-202ENST00000457888 382 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 HMGB1P25-201ENST00000468402 607 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RPL36AP51-201ENST00000487216 318 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC008628.2-201ENST00000502605 298 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC114781.4-201ENST00000513707 639 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 RNU6-507P-201ENST00000516045 100 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC090572.1-201ENST00000519251 160 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AP001646.1-201ENST00000527936 915 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 ADI1P3-201ENST00000549509 470 ntBASIC3.45□□□□□ -1.86
CLIP4Q8N3C7 AC034105.3-201ENST00000565294 442 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 161.6 ms