Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNU6-744P-201ENST00000365557 107 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNU6-637P-201ENST00000384050 107 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNU6-1316P-201ENST00000384242 108 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNU6-198P-201ENST00000384258 104 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNA5SP492-201ENST00000411330 114 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 MTCO2P8-201ENST00000412213 658 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC106883.1-201ENST00000418805 562 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 COX7BP2-201ENST00000437976 242 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 SDR42E1P3-201ENST00000438345 502 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 USP9YP25-201ENST00000457708 443 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RN7SL297P-201ENST00000483161 293 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AP001025.2-201ENST00000490908 477 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC026427.2-201ENST00000506228 536 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 SCARNA15.2-201ENST00000516409 127 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 RNU6-1256P-201ENST00000516539 103 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 HMGB1P14-201ENST00000557424 591 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 MIR4325-201ENST00000583049 90 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC090186.1-201ENST00000605991 572 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AL159972.1-201ENST00000625150 448 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 OR5H6-203ENST00000642105 978 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC138915.1-201ENST00000565427 1685 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 AC092447.10-201ENST00000620607 1652 ntBASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC40Q4G0X9 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 RNU6-270P-201ENST00000364131 105 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 RNU6-114P-201ENST00000384704 105 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 MIR491-201ENST00000384877 84 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 MIR325-201ENST00000385260 98 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 TPMTP3-201ENST00000411928 735 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AL513477.1-202ENST00000417061 214 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC008850.1-201ENST00000427546 362 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AL590383.1-201ENST00000428602 75 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 RSL24D1P3-201ENST00000449255 495 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 RPL7P18-201ENST00000478965 734 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AL135752.1-201ENST00000479477 471 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 SNORA74D-201ENST00000516404 141 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 RNU6-928P-201ENST00000516876 104 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC010620.2-201ENST00000600135 313 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC004696.1-201ENST00000614345 607 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC106754.1-201ENST00000562632 1513 ntBASIC3.03□□□□□ -1.92
CCDC40Q4G0X9 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.03□□□□□ -1.93
CCDC40Q4G0X9 AL355596.1-201ENST00000565399 3996 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 SNORA48.5-201ENST00000391143 135 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 FO393413.1-201ENST00000402892 195 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 ELOCP9-201ENST00000418624 239 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 RPL7L1P10-201ENST00000427790 463 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AL139132.1-201ENST00000431587 344 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 RNU6-420P-201ENST00000458780 107 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 snoU13.28-201ENST00000459235 104 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC117522.3-201ENST00000507974 584 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 SNORA31.21-201ENST00000517180 77 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC004486.1-201ENST00000546846 233 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC124947.2-202ENST00000552735 133 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AMZ2P1-203ENST00000565833 850 ntBASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.02□□□□□ -1.93
CCDC40Q4G0X9 AC005951.2-201ENST00000576282 495 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms