Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC087879.1-201ENST00000474343 374 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC090096.1-201ENST00000489168 390 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 Y_RNA.670-201ENST00000516255 105 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 SNORA31.20-201ENST00000517111 133 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC1.66□□□□□ -2.14
CHD3Q12873 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD3Q12873 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC1.66□□□□□ -2.14
CHD3Q12873 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD3Q12873 AC104307.1-201ENST00000616142 196 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC027514.1-201ENST00000588561 1603 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC1.66□□□□□ -2.14
CHD3Q12873 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.66□□□□□ -2.14
CHD3Q12873 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
CHD3Q12873 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CHD3Q12873 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC1.66□□□□□ -2.14
CHD3Q12873 BTF3P4-201ENST00000418852 495 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC1.66□□□□□ -2.14
CHD3Q12873 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD3Q12873 AC096992.1-201ENST00000459808 709 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC055855.1-201ENST00000489563 579 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 MLLT10P2-201ENST00000506434 249 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 RNU6-889P-201ENST00000517189 103 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 NDUFA5P6-201ENST00000542110 379 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD3Q12873 MIR4255-201ENST00000579351 72 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 U73023.1-201ENST00000603134 700 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AL136363.1-201ENST00000605349 337 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC138473.1-201ENST00000605717 526 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC242628.1-201ENST00000606810 391 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AL353748.2-201ENST00000622148 471 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.65□□□□□ -2.14
CHD3Q12873 CCT4P2-201ENST00000233836 1548 ntBASIC1.65□□□□□ -2.14
CHD3Q12873 MTND5P31-201ENST00000419366 1374 ntBASIC1.65□□□□□ -2.14
CHD3Q12873 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CHD3Q12873 RNU6-1151P-201ENST00000384684 107 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CHD3Q12873 RPL35AP22-201ENST00000436855 335 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 XKRY2-201ENST00000442362 1093 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 SETP11-201ENST00000473027 690 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 AC104689.1-201ENST00000473356 768 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 RNU6-27P-201ENST00000516146 107 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.65□□□□□ -2.15
CHD3Q12873 AL449363.1-201ENST00000617815 186 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 AL356118.1-201ENST00000635272 1078 ntBASIC1.65□□□□□ -2.15
CHD3Q12873 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.65□□□□□ -2.15
CHD3Q12873 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CHD3Q12873 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
CHD3Q12873 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD3Q12873 Y_RNA.191-201ENST00000363972 113 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 RNU6-152P-201ENST00000384037 107 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD3Q12873 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC1.64□□□□□ -2.15
CHD3Q12873 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.64□□□□□ -2.15
CHD3Q12873 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD3Q12873 LY96-202ENST00000518893 430 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD3Q12873 ERHP1-201ENST00000523006 310 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.64□□□□□ -2.15
CHD3Q12873 AC110588.1-201ENST00000559699 137 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 MIR4658-201ENST00000584344 65 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AL355810.1-201ENST00000614629 552 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC012150.2-201ENST00000621300 544 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC068880.5-201ENST00000624331 290 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CHD3Q12873 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.64□□□□□ -2.15
CHD3Q12873 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.64□□□□□ -2.15
CHD3Q12873 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD3Q12873 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CHD3Q12873 RNU6-1249P-201ENST00000363237 111 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
CHD3Q12873 U8.10-201ENST00000384260 133 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.64□□□□□ -2.15
CHD3Q12873 AC234781.2-201ENST00000426370 994 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AL590762.3-201ENST00000436372 640 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 FABP5P3-201ENST00000437960 408 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD3Q12873 FABP5P13-201ENST00000452144 328 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 RPS20P24-201ENST00000457473 361 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC025033.1-201ENST00000463883 194 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.64□□□□□ -2.15
CHD3Q12873 MTAPP1-201ENST00000489154 819 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 RPS29P11-201ENST00000496507 171 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 HMGB1P22-201ENST00000505315 124 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 TRMT112P2-201ENST00000512910 132 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 SNORA31.8-201ENST00000516327 108 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.64□□□□□ -2.15
CHD3Q12873 AC011611.5-201ENST00000552477 578 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD3Q12873 AL049838.1-201ENST00000563647 981 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC023824.2-201ENST00000566185 400 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC1.64□□□□□ -2.15
CHD3Q12873 AP005136.1-201ENST00000579765 429 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC012493.3-201ENST00000604494 112 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC106028.5-201ENST00000610332 395 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 AC107905.1-201ENST00000616204 426 ntBASIC1.64□□□□□ -2.15
CHD3Q12873 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
CHD3Q12873 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.64□□□□□ -2.15
CHD3Q12873 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
CHD3Q12873 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms