Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
MSX1P28360 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
MSX1P28360 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
MSX1P28360 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.14□□□□□ -1.59
MSX1P28360 AC007938.2-201ENST00000604666 2634 ntBASIC5.14□□□□□ -1.59
MSX1P28360 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
MSX1P28360 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX1P28360 RNU6-263P-201ENST00000363811 107 ntBASIC5.14□□□□□ -1.59
MSX1P28360 Y_RNA.304-201ENST00000365011 112 ntBASIC5.14□□□□□ -1.59
MSX1P28360 RNU6-827P-201ENST00000365553 106 ntBASIC5.14□□□□□ -1.59
MSX1P28360 Y_RNA.405-201ENST00000383979 100 ntBASIC5.14□□□□□ -1.59
MSX1P28360 Y_RNA.451-201ENST00000384200 100 ntBASIC5.14□□□□□ -1.59
MSX1P28360 RNU6-937P-201ENST00000384325 106 ntBASIC5.14□□□□□ -1.59
MSX1P28360 Y_RNA.524-201ENST00000384564 100 ntBASIC5.14□□□□□ -1.59
MSX1P28360 Y_RNA.561-201ENST00000384694 100 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AL009179.1-201ENST00000406085 265 ntBASIC5.14□□□□□ -1.59
MSX1P28360 DPPA2P3-201ENST00000411853 655 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX1P28360 SNORD56-201ENST00000413522 71 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX1P28360 SETP5-201ENST00000437270 562 ntBASIC5.14□□□□□ -1.59
MSX1P28360 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX1P28360 RNU7-87P-201ENST00000459343 62 ntBASIC5.14□□□□□ -1.59
MSX1P28360 PPIAP21-201ENST00000464473 501 ntBASIC5.14□□□□□ -1.59
MSX1P28360 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX1P28360 RNU6-1315P-201ENST00000517187 99 ntBASIC5.14□□□□□ -1.59
MSX1P28360 SNORA31.22-201ENST00000517204 135 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AC025755.1-201ENST00000521306 278 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX1P28360 AC008489.1-201ENST00000524271 483 ntBASIC5.14□□□□□ -1.59
MSX1P28360 CASP1P1-201ENST00000526345 212 ntBASIC5.14□□□□□ -1.59
MSX1P28360 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX1P28360 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX1P28360 AC120057.2-201ENST00000571520 271 ntBASIC5.14□□□□□ -1.59
MSX1P28360 U6.106-201ENST00000636360 105 ntBASIC5.14□□□□□ -1.59
MSX1P28360 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX1P28360 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX1P28360 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
MSX1P28360 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
MSX1P28360 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 AL078621.3-201ENST00000623707 2042 ntBASIC5.13□□□□□ -1.59
MSX1P28360 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 RN7SKP227-201ENST00000364445 330 ntBASIC5.13□□□□□ -1.59
MSX1P28360 U3.10-201ENST00000364459 214 ntBASIC5.13□□□□□ -1.59
MSX1P28360 RNU6-76P-201ENST00000384060 104 ntBASIC5.13□□□□□ -1.59
MSX1P28360 SNORA70-201ENST00000384436 135 ntBASIC5.13□□□□□ -1.59
MSX1P28360 RNU6-1117P-201ENST00000384525 104 ntBASIC5.13□□□□□ -1.59
MSX1P28360 MIR551A-201ENST00000385042 96 ntBASIC5.13□□□□□ -1.59
MSX1P28360 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX1P28360 OR2AO1P-201ENST00000476497 403 ntBASIC5.13□□□□□ -1.59
MSX1P28360 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX1P28360 RPS23P1-201ENST00000491662 432 ntBASIC5.13□□□□□ -1.59
MSX1P28360 GMPSP1-201ENST00000514075 579 ntBASIC5.13□□□□□ -1.59
MSX1P28360 RNU6-1012P-201ENST00000516606 109 ntBASIC5.13□□□□□ -1.59
MSX1P28360 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX1P28360 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX1P28360 AP006245.1-201ENST00000522549 120 ntBASIC5.13□□□□□ -1.59
MSX1P28360 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX1P28360 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX1P28360 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX1P28360 MIR4700-201ENST00000578311 74 ntBASIC5.13□□□□□ -1.59
MSX1P28360 AC091953.5-201ENST00000622919 233 ntBASIC5.13□□□□□ -1.59
MSX1P28360 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX1P28360 C4BPAP1-201ENST00000415474 1893 ntBASIC5.13□□□□□ -1.59
MSX1P28360 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX1P28360 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 AL359955.1-201ENST00000455242 3275 ntBASIC5.12□□□□□ -1.59
MSX1P28360 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.12□□□□□ -1.59
MSX1P28360 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
MSX1P28360 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.12□□□□□ -1.59
MSX1P28360 RNU4-90P-201ENST00000362773 141 ntBASIC5.12□□□□□ -1.59
MSX1P28360 RNU6-171P-201ENST00000384354 107 ntBASIC5.12□□□□□ -1.59
MSX1P28360 MIR301A-201ENST00000385261 86 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AC005042.1-201ENST00000393397 800 ntBASIC5.12□□□□□ -1.59
MSX1P28360 MIR1286-201ENST00000408112 78 ntBASIC5.12□□□□□ -1.59
MSX1P28360 RNU6ATAC15P-201ENST00000408279 121 ntBASIC5.12□□□□□ -1.59
MSX1P28360 RN7SKP51-201ENST00000410781 304 ntBASIC5.12□□□□□ -1.59
MSX1P28360 RNU4-78P-201ENST00000410940 126 ntBASIC5.12□□□□□ -1.59
MSX1P28360 AL354868.1-201ENST00000417077 482 ntBASIC5.12□□□□□ -1.59
MSX1P28360 RPS27AP12-201ENST00000429552 465 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms