Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG1P18858 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.28□□□□□ -1.56
LIG1P18858 IGLV3-26-201ENST00000520756 302 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG1P18858 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG1P18858 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG1P18858 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC5.28□□□□□ -1.56
LIG1P18858 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG1P18858 RPL7P50-201ENST00000600588 727 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AC005014.2-201ENST00000607795 599 ntBASIC5.28□□□□□ -1.56
LIG1P18858 Z69720.2-201ENST00000624755 279 ntBASIC5.28□□□□□ -1.56
LIG1P18858 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG1P18858 AL049641.1-201ENST00000441055 1948 ntBASIC5.28□□□□□ -1.56
LIG1P18858 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.28□□□□□ -1.56
LIG1P18858 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.28□□□□□ -1.56
LIG1P18858 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.27□□□□□ -1.57
LIG1P18858 Y_RNA.135-201ENST00000363439 95 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RNA5SP87-201ENST00000384155 118 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RPL31P2-201ENST00000413849 377 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RPL7P10-201ENST00000417407 739 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG1P18858 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 CBX3P6-201ENST00000430257 527 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG1P18858 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG1P18858 RPL36AP13-201ENST00000457490 317 ntBASIC5.27□□□□□ -1.57
LIG1P18858 MIR2053-201ENST00000459295 91 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RN7SL354P-201ENST00000469282 294 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RPL21P93-201ENST00000480465 489 ntBASIC5.27□□□□□ -1.57
LIG1P18858 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG1P18858 AC007686.1-201ENST00000488511 463 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.27□□□□□ -1.57
LIG1P18858 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.27□□□□□ -1.57
LIG1P18858 MTND4LP22-201ENST00000508209 276 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AC104806.1-201ENST00000508720 308 ntBASIC5.27□□□□□ -1.57
LIG1P18858 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG1P18858 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG1P18858 SNORA25.10-201ENST00000515926 124 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RNU6-64P-201ENST00000517119 105 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RANP9-201ENST00000519957 271 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AL133271.1-201ENST00000538229 291 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.27□□□□□ -1.57
LIG1P18858 MIR4700-201ENST00000578311 74 ntBASIC5.27□□□□□ -1.57
LIG1P18858 AC012443.1-201ENST00000605605 231 ntBASIC5.27□□□□□ -1.57
LIG1P18858 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 AC004825.2-201ENST00000616634 455 ntBASIC5.27□□□□□ -1.57
LIG1P18858 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.27□□□□□ -1.57
LIG1P18858 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LIG1P18858 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.27□□□□□ -1.57
LIG1P18858 TPTE2P4-201ENST00000258589 1605 ntBASIC5.26□□□□□ -1.57
LIG1P18858 API5P2-201ENST00000397055 1498 ntBASIC5.26□□□□□ -1.57
LIG1P18858 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG1P18858 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
LIG1P18858 Y_RNA.47-201ENST00000362697 108 ntBASIC5.26□□□□□ -1.57
LIG1P18858 RNU6-1078P-201ENST00000364522 103 ntBASIC5.26□□□□□ -1.57
LIG1P18858 MIR153-1-201ENST00000384914 90 ntBASIC5.26□□□□□ -1.57
LIG1P18858 SOD2P1-201ENST00000396543 562 ntBASIC5.26□□□□□ -1.57
LIG1P18858 Y_RNA.646-201ENST00000410980 101 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.26□□□□□ -1.57
LIG1P18858 RAC1P6-201ENST00000423911 575 ntBASIC5.26□□□□□ -1.57
LIG1P18858 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.26□□□□□ -1.57
LIG1P18858 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC5.26□□□□□ -1.57
LIG1P18858 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.26□□□□□ -1.57
LIG1P18858 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 RNU6-189P-201ENST00000516120 101 ntBASIC5.26□□□□□ -1.57
LIG1P18858 RNU1-6P-201ENST00000516290 144 ntBASIC5.26□□□□□ -1.57
LIG1P18858 RNU6-1092P-201ENST00000516955 87 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.26□□□□□ -1.57
LIG1P18858 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG1P18858 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.26□□□□□ -1.57
LIG1P18858 AC124068.1-201ENST00000563131 678 ntBASIC5.26□□□□□ -1.57
LIG1P18858 MIR4293-201ENST00000584305 78 ntBASIC5.26□□□□□ -1.57
LIG1P18858 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.26□□□□□ -1.57
LIG1P18858 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.26□□□□□ -1.57
LIG1P18858 AL391358.1-201ENST00000605342 190 ntBASIC5.26□□□□□ -1.57
LIG1P18858 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AL138726.1-201ENST00000614873 333 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AL161637.1-201ENST00000622380 412 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AC090337.1-201ENST00000579651 2074 ntBASIC5.26□□□□□ -1.57
LIG1P18858 AC103710.2-202ENST00000641454 2853 ntBASIC5.26□□□□□ -1.57
LIG1P18858 ZNF734P-201ENST00000419494 1534 ntBASIC5.26□□□□□ -1.57
LIG1P18858 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.26□□□□□ -1.57
LIG1P18858 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms