Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL590084.2-201ENST00000401481 382 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 CYCSP45-201ENST00000402289 315 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AL021407.1-201ENST00000404531 386 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 RNU6-1077P-201ENST00000410506 102 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 RNU2-42P-201ENST00000410697 113 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 BOLA3P4-201ENST00000418151 400 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC098592.1-201ENST00000419352 333 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 MRPS36P1-201ENST00000421291 307 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 HSPE1P1-201ENST00000421494 318 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXC4P09017 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 MTCYBP3-201ENST00000445588 1137 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AL109933.2-201ENST00000452651 260 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 RFC5P1-201ENST00000454419 874 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 RPL31P50-201ENST00000471002 296 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 UBE2DNL-203ENST00000474922 222 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 MLLT10P2-201ENST00000506434 249 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 SNORA31.8-201ENST00000516327 108 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 RNU6-232P-201ENST00000517144 64 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXC4P09017 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXC4P09017 AC005832.3-201ENST00000537929 631 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 COX6CP3-201ENST00000580869 223 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 MIR4999-201ENST00000585029 91 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC010738.1-201ENST00000604970 987 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC069545.1-201ENST00000605671 358 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC002076.2-201ENST00000617362 122 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AL607023.1-201ENST00000620045 248 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC006111.3-201ENST00000622137 383 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 AC079248.2-201ENST00000623779 326 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXC4P09017 TAB3P1-202ENST00000452645 1634 ntBASIC2.71□□□□□ -1.98
HOXC4P09017 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HOXC4P09017 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXC4P09017 GDI2P1-201ENST00000429312 1336 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXC4P09017 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXC4P09017 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
HOXC4P09017 RNU6-582P-201ENST00000362989 107 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RNU6-839P-201ENST00000363347 108 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RNU6-553P-201ENST00000364047 96 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.7□□□□□ -1.98
HOXC4P09017 SNORD116-9-201ENST00000384000 95 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 Y_RNA.436-201ENST00000384097 102 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 SNORD116-3-201ENST00000384287 95 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 SNORD116-7-201ENST00000384404 95 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 SNORD116-5-201ENST00000384462 95 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 U3.29-201ENST00000391296 212 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPL21P75-201ENST00000396599 483 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 UBE2V1P2-201ENST00000397758 440 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPL21P28-201ENST00000401418 483 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AL592114.1-201ENST00000403842 483 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 FCF1P2-201ENST00000415284 583 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 MORF4L1P6-201ENST00000418771 268 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXC4P09017 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 RPS29P6-201ENST00000438196 145 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AC241584.1-201ENST00000438469 1241 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AL354941.1-201ENST00000438600 464 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 USP9YP22-201ENST00000438971 294 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXC4P09017 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXC4P09017 AC108938.1-201ENST00000451204 136 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXC4P09017 RPL23AP31-201ENST00000456160 467 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPL21P39-201ENST00000463605 483 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 BZW1P2-201ENST00000473537 826 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPL7P18-201ENST00000478965 734 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 RPL21P93-201ENST00000480465 489 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AC233702.1-201ENST00000482905 502 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AC087190.1-201ENST00000484462 480 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 LINC00888-204ENST00000487386 421 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AC093591.1-201ENST00000491435 481 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXC4P09017 RPL21P16-201ENST00000495531 483 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.7□□□□□ -1.98
HOXC4P09017 MTCYBP16-201ENST00000509187 1129 ntBASIC2.7□□□□□ -1.98
HOXC4P09017 AC098799.2-201ENST00000509466 868 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 164.2 ms